Automatic benchmark generation for cache optimization of matrix operations. - John D. McCalpin; Mark Smotherman (ACM Southeast Regional Conference, 1995)

A Case Study of Some Issues in the Optimization of Fortran 90 Array Notation. - John D. McCalpin (Sci. Program., 1996)

The SGI Origin software environment and application performance. - Steve Whitney; John D. McCalpin; Nawaf Bitar; John L. Richardson; Luis Stevens (COMPCON, 1997)

Characterization of simultaneous multithreading (SMT) efficiency in POWER5. - Harry M. Mathis; Alex E. Mericas; John D. McCalpin; Richard J. Eickemeyer; Steven R. Kunkel (IBM J. Res. Dev., 2005)

PerfExpert: An Easy-to-Use Performance Diagnosis Tool for HPC Applications. - Martin Burtscher; Byoung-Do Kim; Jeffrey R. Diamond; John D. McCalpin; Lars Koesterke; James C. Browne (SC, 2010)

Evaluation and optimization of multicore performance bottlenecks in supercomputing applications. - Jeffrey R. Diamond; Martin Burtscher; John D. McCalpin; Byoung-Do Kim; Stephen W. Keckler; James C. Browne (ISPASS, 2011)

Transforming a linear algebra core to an FFT accelerator. - Ardavan Pedram; John D. McCalpin; Andreas Gerstlauer (ASAP, 2013)

A Highly Efficient Multicore Floating-Point FFT Architecture Based on Hybrid Linear Algebra/FFT Cores. - Ardavan Pedram; John D. McCalpin; Andreas Gerstlauer (J. Signal Process. Syst., 2014)

Trends in system cost and performance balances and implications for the future of HPC. - John D. McCalpin (Co-HPC@SC, 2015)

HPL and DGEMM performance variability on the Xeon Platinum 8160 processor. - John D. McCalpin (SC, 2018)

Appearances of the Birthday Paradox in High Performance Computing. - Victor Eijkhout; Margaret Myers; John D. McCalpin (CoRR, 2019)

AI-driven multiscale simulations illuminate mechanisms of SARS-CoV-2 spike dynamics. - Lorenzo Casalino; Abigail C. Dommer; Zied Gaieb; Emília P. Barros; Terra Sztain; Surl-Hee Ahn; Anda Trifan; Alexander Brace; Anthony T. Bogetti; Austin Clyde; Heng Ma; Hyungro Lee; et al. (Int. J. High Perform. Comput. Appl., 2021)

Don't Mesh Around: Side-Channel Attacks and Mitigations on Mesh Interconnects. - Miles Dai; Riccardo Paccagnella; Miguel Gomez-Garcia; John D. McCalpin; Mengjia Yan 001 (USENIX Security Symposium, 2022)

Intelligent resolution: Integrating Cryo-EM with AI-driven multi-resolution simulations to observe the severe acute respiratory syndrome coronavirus-2 replication-transcription machinery in action. - Anda Trifan; Defne Gorgun; Michael Salim; Zongyi Li; Alexander Brace; Maxim Zvyagin; Heng Ma; Austin Clyde; David Clark; David J. Hardy; Tom Burnley; Lei Huang 019; et al. (Int. J. High Perform. Comput. Appl., 2022)

Bandwidth Limits in the Intel Xeon Max (Sapphire Rapids with HBM) Processors. - John D. McCalpin (ISC Workshops, 2023)

Application Performance Analysis: A Report on the Impact of Memory Bandwidth. - Yinzhi Wang; John D. McCalpin; Junjie Li 003; Matthew Cawood; John Cazes; Hanning Chen; Lars Koesterke; Hang Liu; Chun-Yaung Lu; Robert T. McLay; Kent F. Milfeld; Amit Ruhela; et al. (ISC Workshops, 2023)

#COVIDisAirborne: AI-enabled multiscale computational microscopy of delta SARS-CoV-2 in a respiratory aerosol. - Abigail C. Dommer; Lorenzo Casalino; Fiona L. Kearns; Mia A. Rosenfeld; Nicholas Wauer; Surl-Hee Ahn; John Russo 003; A. Sofia F. Oliveira; Clare Morris; Anthony T. Bogetti; Anda Trifan; Alexander Brace; et al. (Int. J. High Perform. Comput. Appl., 2023)

Performance Analysis of Scientific Applications on an NVIDIA Grace System. - Amit Ruhela; John Cazes; John D. McCalpin; Carlos Del-Castillo-Negrete; Junjie Li 003; Hang Liu; Hanning Chen; Chun-Yaung Lu; Kent F. Milfeld; Wenyang Zhang; Ian Wang; Lars Koesterke; et al. (SC Workshops, 2024)