The GAAS Metagenomic Tool and Its Estimations of Viral and Microbial Average Genome Size in Four Major Biomes. - Florent E. Angly; Dana Willner; Alejandra Prieto-Davó; Robert A. Edwards; Robert Schmieder; Rebecca Vega-Thurber; Dionysios A. Antonopoulos; Katie Barott; Matthew T. Cottrell; Christelle Desnues; Elizabeth A. Dinsdale; Mike Furlan; et al. (PLoS Comput. Biol., 2009)

WaveCNV: allele-specific copy number alterations in primary tumors and xenograft models from next-generation sequencing. - Carson Holt; Bojan Losic; Deepa Pai; Zhen Zhao; Quang Trinh; Sujata Syam; Niloofar Arshadi; Gun Ho Jang; Johar Ali; Tim Beck; John D. McPherson; Lakshmi B. Muthuswamy (Bioinform., 2014)

ShatterProof: operational detection and quantification of chromothripsis. - Shaylan K. Govind; Amin Zia; Pablo H. Hennings-Yeomans; John D. Watson; Michael Fraser; Catalina V. Anghel; Alexander Wyatt; Theodorus van der Kwast; Colin C. Collins; John D. McPherson; Robert G. Bristow; Paul C. Boutros (BMC Bioinform., 2014)

Optimization of miRNA-seq data preprocessing. - Shirley Tam; Ming-Sound Tsao; John D. McPherson (Briefings Bioinform., 2015)