An Interactive FORTRAN Program for Three-dimensional Molecular Visualization. - Annankoil R. Srinivasan; John D. Westbrook; Wilma K. Olson (Comput. Chem., 1992)

STAR/mmCIF: An ontology for macromolecular structure. - John D. Westbrook; Philip E. Bourne (Bioinform., 2000)

The Protein Data Bank. - Helen M. Berman; John D. Westbrook; Zukang Feng; Gary Gilliland; T. N. Bhat; Helge Weissig; Ilya N. Shindyalov; Philip E. Bourne (Nucleic Acids Res., 2000)

The PDB data uniformity project. - T. N. Bhat; Philip E. Bourne; Zukang Feng; Gary Gilliland; Shri Jain; Veerasamy Ravichandran; Bohdan Schneider; Kata Schneider; Narmada Thanki; Helge Weissig; John D. Westbrook; Helen M. Berman (Nucleic Acids Res., 2001)

An ontology driven architecture for derived representations of macromolecular structure. - Douglas S. Greer; John D. Westbrook; Philip E. Bourne (Bioinform., 2002)

The Protein Data Bank: unifying the archive. - John D. Westbrook; Zukang Feng; Shri Jain; T. N. Bhat; Narmada Thanki; Veerasamy Ravichandran; Gary Gilliland; Wolfgang Bluhm; Helge Weissig; Douglas S. Greer; Philip E. Bourne; Helen M. Berman (Nucleic Acids Res., 2002)

The Protein Data Bank and structural genomics. - John D. Westbrook; Zukang Feng; Li Chen 022; Huanwang Yang; Helen M. Berman (Nucleic Acids Res., 2003)

Tools for the automatic identification and classification of RNA base pairs. - Huanwang Yang; Fabrice Jossinet; Neocles Leontis; Li Chen 022; John D. Westbrook; Helen M. Berman; Eric Westhof (Nucleic Acids Res., 2003)

The Need for Dictionaries, Ontologies, and Controlled Vocabularies. - Helen M. Berman; John D. Westbrook (OMICS, 2003)

The Status of Structural Genomics Defined Through the Analysis of Current Targets and Structures. - Philip E. Bourne; C. K. J. Allerston; Werner G. Krebs; Wilfred W. Li; Ilya N. Shindyalov; Adam Godzik; Iddo Friedberg; Tong Liu; David L. Wild; Seungwoo Hwang; Zoubin Ghahramani; Li Chen 022; et al. (Pacific Symposium on Biocomputing, 2004)

The Protein Data Bank and lessons in data management. - Philip E. Bourne; John D. Westbrook; Helen M. Berman (Briefings Bioinform., 2004)

TargetDB: a target registration database for structural genomics projects. - Li Chen 022; Rose Oughtred; Helen M. Berman; John D. Westbrook (Bioinform., 2004)

Ligand Depot: a data warehouse for ligands bound to macromolecules. - Zukang Feng; Li Chen 022; Himabindu Maddula; Ozgur Akcan; Rose Oughtred; Helen M. Berman; John D. Westbrook (Bioinform., 2004)

The distribution and query systems of the RCSB Protein Data Bank. - Philip E. Bourne; Kenneth J. Addess; Wolfgang Bluhm; Li Chen 022; Nita Deshpande; Zukang Feng; Ward Fleri; Rachel Kramer Green; Jeffrey C. Merino-Ott; Wayne Townsend-Merino; Helge Weissig; John D. Westbrook; et al. (Nucleic Acids Res., 2004)

A framework for scientific data modeling and automated software development. - Rasmus H. Fogh; Wayne Boucher; Wim F. Vranken; Anne Pajon; Tim J. Stevens; T. N. Bhat; John D. Westbrook; John M. C. Ionides; Ernest D. Laue (Bioinform., 2005)

PDBML: the representation of archival macromolecular structure data in XML. - John D. Westbrook; Nobutoshi Ito; Haruki Nakamura; Kim Henrick; Helen M. Berman (Bioinform., 2005)

The RCSB Protein Data Bank: a redesigned query system and relational database based on the mmCIF schema. - Nita Deshpande; Kenneth J. Addess; Wolfgang Bluhm; Jeffrey C. Merino-Ott; Wayne Townsend-Merino; Qing Zhang; Charlie Knezevich; Lie Xie; Li Chen 022; Zukang Feng; Rachel Kramer Green; Judith L. Flippen-Anderson; et al. (Nucleic Acids Res., 2005)

The RCSB PDB information portal for structural genomics. - Andrei Kouranov; Lei Xie 006; Joanna de la Cruz; Li Chen 022; John D. Westbrook; Philip E. Bourne; Helen M. Berman (Nucleic Acids Res., 2006)

Remediation of the protein data bank archive. - Kim Henrick; Zukang Feng; Wolfgang Bluhm; Dimitris Dimitropoulos; Jurgen F. Doreleijers; Shuchismita Dutta; Judith L. Flippen-Anderson; John M. C. Ionides; Chisa Kamada; Eugene Krissinel; Catherine L. Lawson; John L. Markley; et al. (Nucleic Acids Res., 2008)

Bioinformatic Databases. - Katherine G. Herbert; Junilda Spirollari; Jason Tsong-Li Wang; William H. Piel; John D. Westbrook; Winona C. Barker; Zhang-Zhi Hu; Cathy H. Wu (Wiley Encyclopedia of Computer Science and Engineering, 2008)

The protein structure initiative structural genomics knowledgebase. - Helen M. Berman; John D. Westbrook; Margaret J. Gabanyi; Wendy Tao; Raship Shah; Andrei Kouranov; Torsten Schwede; Konstantin Arnold; Florian Kiefer; Lorenza Bordoli; Jürgen Kopp; Michael Podvinec; et al. (Nucleic Acids Res., 2009)

EMDataBank.org: unified data resource for CryoEM. - Catherine L. Lawson; Matthew L. Baker; Christoph Best; Chunxiao Bi; Matthew T. Dougherty; Powei Feng; Glen van Ginkel; Batsal Devkota; Ingvar C. Lagerstedt; Steven J. Ludtke; Richard H. Newman; Thomas J. Oldfield; et al. (Nucleic Acids Res., 2011)

The RCSB Protein Data Bank: redesigned web site and web services. - Peter W. Rose; Bojan Beran; Chunxiao Bi; Wolfgang Bluhm; Dimitris Dimitropoulos; David S. Goodsell; Andreas Prlic; Martha Quesada; Greg B. Quinn; John D. Westbrook; Jasmine Young; Benjamin T. Yukich; et al. (Nucleic Acids Res., 2011)

Chemical annotation of small and peptide-like molecules at the Protein Data Bank. - Jasmine Young; Zukang Feng; Dimitris Dimitropoulos; Raul Sala; John D. Westbrook; Marina Zhuravleva; Chenghua Shao; Martha Quesada; Ezra Peisach; Helen M. Berman (Database J. Biol. Databases Curation, 2013)

The RCSB Protein Data Bank: new resources for research and education. - Peter W. Rose; Chunxiao Bi; Wolfgang Bluhm; Cole H. Christie; Dimitris Dimitropoulos; Shuchismita Dutta; Rachel Kramer Green; David S. Goodsell; Andreas Prlic; Martha Quesada; Greg B. Quinn; Alexander G. Ramos; et al. (Nucleic Acids Res., 2013)

The Nucleic Acid Database: new features and capabilities. - Buvaneswari Coimbatore Narayanan; John D. Westbrook; Saheli Ghosh; Anton I. Petrov; Blake A. Sweeney; Craig L. Zirbel; Neocles Leontis; Helen M. Berman (Nucleic Acids Res., 2014)

The chemical component dictionary: complete descriptions of constituent molecules in experimentally determined 3D macromolecules in the Protein Data Bank. - John D. Westbrook; Chenghua Shao; Zukang Feng; Marina Zhuravleva; Sameer Velankar; Jasmine Young (Bioinform., 2015)

The RCSB Protein Data Bank: views of structural biology for basic and applied research and education. - Peter W. Rose; Andreas Prlic; Chunxiao Bi; Wolfgang Bluhm; Cole H. Christie; Shuchismita Dutta; Rachel Kramer Green; David S. Goodsell; John D. Westbrook; Jesse Woo; Jasmine Young; Christine Zardecki; et al. (Nucleic Acids Res., 2015)

EMDataBank unified data resource for 3DEM. - Catherine L. Lawson; Ardan Patwardhan; Matthew L. Baker; Corey Hryc; Eduardo Sanz-García; Brian P. Hudson; Ingvar C. Lagerstedt; Steven J. Ludtke; Grigore Pintilie; Raul Sala; John D. Westbrook; Helen M. Berman; et al. (Nucleic Acids Res., 2016)

Crystallography and Databases. - Ian J. Bruno; Saulius Grazulis; John R. Helliwell; Soorya N. Kabekkodu; Brian McMahon; John D. Westbrook (Data Sci. J., 2017)

The RCSB protein data bank: integrative view of protein, gene and 3D structural information. - Peter W. Rose; Andreas Prlic; Ali Altunkaya; Chunxiao Bi; Anthony R. Bradley; Cole H. Christie; Luigi Di Costanzo; Jose M. Duarte; Shuchismita Dutta; Zukang Feng; Rachel Kramer Green; David S. Goodsell; et al. (Nucleic Acids Res., 2017)

Worldwide Protein Data Bank biocuration supporting open access to high-quality 3D structural biology data. - Jasmine Young; John D. Westbrook; Zukang Feng; Ezra Peisach; Irina Persikova; Raul Sala; Sanchayita Sen; John M. Berrisford; Jawahar Swaminathan; Thomas J. Oldfield; Aleksandras Gutmanas; Reiko Igarashi; et al. (Database J. Biol. Databases Curation, 2018)

RCSB Protein Data Bank: biological macromolecular structures enabling research and education in fundamental biology, biomedicine, biotechnology and energy. - Stephen K. Burley; Helen M. Berman; Charmi Bhikadiya; Chunxiao Bi; Li Chen 022; Luigi Di Costanzo; Cole H. Christie; Kenneth Dalenberg; Jose M. Duarte; Shuchismita Dutta; Zukang Feng; Sutapa Ghosh; et al. (Nucleic Acids Res., 2019)

Impact of the Protein Data Bank Across Scientific Disciplines. - Zukang Feng; Natalie Verdiguel; Luigi Di Costanzo; David S. Goodsell; John D. Westbrook; Stephen K. Burley; Christine Zardecki (Data Sci. J., 2020)

RCSB Protein Data Bank 1D tools and services. - Joan Segura; Yana Rose; John D. Westbrook; Stephen K. Burley; Jose M. Duarte (Bioinform., 2021)

RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental biology, biomedicine, biotechnology, bioengineering and energy sciences. - Stephen K. Burley; Charmi Bhikadiya; Chunxiao Bi; Sebastian Bittrich; Li Chen 022; Gregg V. Crichlow; Cole H. Christie; Kenneth Dalenberg; Luigi Di Costanzo; Jose M. Duarte; Shuchismita Dutta; Zukang Feng; et al. (Nucleic Acids Res., 2021)

RCSB Protein Data Bank: improved annotation, search and visualization of membrane protein structures archived in the PDB. - Sebastian Bittrich; Yana Rose; Joan Segura; Robert Lowe; John D. Westbrook; Jose M. Duarte; Stephen K. Burley (Bioinform., 2022)

Digitizing Suzette: Creating a Framework for the Collaborative Analysis of an Historical French Textbook. - John D. Westbrook; Diane Jakacki; Rebecca Heintzelman; Juliya Harnood (DH, 2023)

RCSB Protein Data Bank (RCSB.org): delivery of experimentally-determined PDB structures alongside one million computed structure models of proteins from artificial intelligence/machine learning. - Stephen K. Burley; Charmi Bhikadiya; Chunxiao Bi; Sebastian Bittrich; Henry Chao; Li Chen 022; Paul A. Craig; Gregg V. Crichlow; Kenneth Dalenberg; Jose M. Duarte; Shuchismita Dutta; Maryam Fayazi; et al. (Nucleic Acids Res., 2023)

PDB NextGen Archive: centralizing access to integrated annotations and enriched structural information by the Worldwide Protein Data Bank. - Preeti Choudhary; Zukang Feng; John M. Berrisford; Henry Chao; Yasuyo Ikegawa; Ezra Peisach; Dennis W. Piehl; James Smith 002; Ahsan Tanweer; Mihaly Varadi; John D. Westbrook; Jasmine Young; et al. (Database J. Biol. Databases Curation, 2024)