Rebuilding the Visible Man. - John E. Stewart; William C. Broaddus; James H. Johnson (VBC, 1996)

Quantitative three-dimensional analysis and diffusion modeling of oligonucleotide concentrations after direct intraparenchymal brain infusion. - Peter J. Haar; John E. Stewart; George T. Gillies; Sujit S. Prabhu; William C. Broaddus (IEEE Trans. Biomed. Eng., 2001)

Team Knowledge Research: Emerging Trends and Critical Needs. - Jessica L. Wildman; Amanda L. Thayer; Davin Pavlas; Eduardo Salas; John E. Stewart; William R. Howse (Hum. Factors, 2012)

Implementing an XML authoring project in a new media course. - John E. Stewart (IPCC, 2014)

The direction of evolution: The rise of cooperative organization. - John E. Stewart (Biosyst., 2014)

Towards a general theory of the major cooperative evolutionary transitions. - John E. Stewart (Biosyst., 2020)

The evolution and development of consciousness: the subject-object emergence hypothesis. - John E. Stewart (Biosyst., 2022)