LTR_STRUC: a novel search and identification program for LTR retrotransposons. - Eugene M. McCarthy; John F. McDonald 002 (Bioinform., 2003)

Ovarian cancer detection from metabolomic liquid chromatography/mass spectrometry data by support vector machines. - Wei Guan 002; Manshui Zhou; Christina Y. Hampton; Benedict B. Benigno; L. DeEtte Walker; Alexander G. Gray; John F. McDonald 002; Facundo M. Fernández (BMC Bioinform., 2009)

Transcriptional override: a regulatory network model of indirect responses to modulations in microRNA expression. - Christopher G. Hill; Lilya V. Matyunina; L. DeEtte Walker; Benedict B. Benigno; John F. McDonald 002 (BMC Syst. Biol., 2014)

Distinct metabolic responses of an ovarian cancer stem cell line. - Kathleen A. Vermeersch; Lijuan Wang; John F. McDonald 002; Mark P. Styczynski (BMC Syst. Biol., 2014)

Leveraging TCGA gene expression data to build predictive models for cancer drug response. - Evan A. Clayton; Toyya A. Pujol; John F. McDonald 002; Peng Qiu (BMC Bioinform., 2020)