A method for evalutating CT-based surgical registration. - Randy E. Ellis; David J. Fleet; J. Tim Bryant; John F. Rudan; P. Fenton (CVRMed, 1997)

A Surgical Planning and Guidance System for High Tibial Osteotomies. - C. Y. Tso; Randy E. Ellis; John F. Rudan; M. M. Harrison (MICCAI, 1998)

Minimally Invasive Excision of Deep Bone Tumors. - Randy E. Ellis; D. Kerr; John F. Rudan; L. Davidson (MICCAI, 2001)

A computational model of postoperative knee kinematics. - E. Chen; Randy E. Ellis; J. Tim Bryant; John F. Rudan (Medical Image Anal., 2001)

Affine Transformations and Atlases: Assessing a New Navigation Tool for Knee Arthroplasty. - Burton Ma; John F. Rudan; Randy E. Ellis (MICCAI (1), 2002)

Computer Assisted Alignment of the Oxford Unicompartmental Knee Arthroplasty: The Kingston Experience with Three Techniques. - D. J. Mayman; John F. Rudan; David R. Pichora; D. Watson; Randy E. Ellis (MICCAI (2), 2003)

On the Use of Laser Scans to Validate Reverse Engineering of Bony Anatomy. - Joseph B. Anstey; Erin Janine Smith; Brian Rasquinha; John F. Rudan; Randy E. Ellis (MMVR, 2011)

Registration Stability of Physical Templates in Hip Surgery. - Manuela Kunz; John F. Rudan; Gavin C. A. Wood; Randy E. Ellis (MMVR, 2011)

Articular surface remodeling of the hip after periacetabular osteotomy. - Brian Rasquinha; Junaid Sayani; John F. Rudan; Gavin C. A. Wood; Randy E. Ellis (Int. J. Comput. Assist. Radiol. Surg., 2012)

Design and development of a mobile image overlay system for needle interventions. - M. Anand; Franklin King; Tamas Ungi; Andras Lasso; John F. Rudan; Jagadeesan Jayender; Jan Fritz; John A. Carrino; Ferenc A. Jolesz; Gabor Fichtinger (EMBC, 2014)

A Matrix Lie Group Approach to Statistical Shape Analysis of Bones. - Mohamed S. Hefny; John F. Rudan; Randy E. Ellis (MMVR, 2014)

Computer-assisted hip resurfacing planning using Lie group shape models. - Mohamed S. Hefny; John F. Rudan; Randy E. Ellis (Int. J. Comput. Assist. Radiol. Surg., 2015)

The influence of osteophyte depiction in CT for patient-specific guided hip resurfacing procedures. - Manuela Kunz; S. Balaketheeswaran; Randy E. Ellis; John F. Rudan (Int. J. Comput. Assist. Radiol. Surg., 2015)

A multi-vertebrae CT to US registration of the lumbar spine in clinical data. - Simrin Nagpal; Purang Abolmaesumi; Abtin Rasoulian; Ilker Hacihaliloglu; Tamas Ungi; Jill Osborn; Victoria A. Lessoway; John F. Rudan; Melanie Jaeger; Robert N. Rohling; Dan P. Borschneck; Parvin Mousavi (Int. J. Comput. Assist. Radiol. Surg., 2015)

Visual feedback mounted on surgical tool: proof of concept. - Kaci Carter; Thomas Vaughan; Matthew S. Holden; Gabrielle Gauvin; Padina Pezeshki; Andras Lasso; Tamas Ungi; Evelyn Morin; John F. Rudan; Cecil Jay Engel; Gabor Fichtinger (Image-Guided Procedures, 2016)

Measurement of electromagnetic tracking error in a navigated breast surgery setup. - Vinyas Harish; Aidan Baksh; Tamas Ungi; Andras Lasso; Zachary Baum; Gabrielle Gauvin; Cecil Jay Engel; John F. Rudan; Gabor Fichtinger (Image-Guided Procedures, 2016)

Accuracy of lesion boundary tracking in navigated breast tumor excision. - Emily Heffernan; Tamas Ungi; Thomas Vaughan; Padina Pezeshki; Andras Lasso; Gabrielle Gauvin; John F. Rudan; Cecil Jay Engel; Evelyn Morin; Gabor Fichtinger (Image-Guided Procedures, 2016)

Personalized Guides for Registration in Surgical Navigation. - Andrew W. L. Dickinson; Brian J. Rasquinha; John F. Rudan; Randy E. Ellis (MMVR, 2016)

A Toroidal Probe for Measuring Surgically Exposed Joint Centers. - Brian J. Rasquinha; Kate S. M. Loe; Andrew W. L. Dickinson; John F. Rudan; Randy E. Ellis (MMVR, 2016)

Intraoperative application of hand-held structured light scanning: a feasibility study. - Brandon Chan; Jason Auyeung; John F. Rudan; Randy E. Ellis; Manuela Kunz (Int. J. Comput. Assist. Radiol. Surg., 2016)

Navigated Breast Tumor Excision Using Electromagnetically Tracked Ultrasound and Surgical Instruments. - Tamas Ungi; Gabrielle Gauvin; Andras Lasso; Caitlin T. Yeo; Padina Pezeshki; Thomas Vaughan; Kaci Carter; John F. Rudan; Cecil Jay Engel; Gabor Fichtinger (IEEE Trans. Biomed. Eng., 2016)

Evaluation of an interactive ultrasound-based breast tumor contouring workflow. - Aniqah T. Mair; Thomas A. Vaughan; Tamas Ungi; Andras Lasso; Cecil Jay Engel; John F. Rudan; Gabor Fichtinger (Image-Guided Procedures, 2017)

Study into the displacement of tumor localization needle during navigated breast cancer surgery. - Christina Yan; Tamas Ungi; Gabrielle Gauvin; Doris Jabs; Andras Lasso; Cecil Jay Engel; John F. Rudan; Gabor Fichtinger (Image-Guided Procedures, 2017)

Translatory hip kinematics measured with optoelectronic surgical navigation. - Sima Zakani; John F. Rudan; Randy E. Ellis (Int. J. Comput. Assist. Radiol. Surg., 2017)

Navigated real-time molecular analysis in the operating theatre, demonstration of concept. - Mark Asselin; Martin Kaufmann; Julia Wiercigroch; Tamas Ungi; Andras Lasso; John F. Rudan; Gabor Fichtinger (Image-Guided Procedures, 2019)

Tissue classification using machine learning to aid in intraoperative registration: a pilot study. - Brandon Chan; Jason Auyeung; John F. Rudan; Parvin Mousavi; Manuela Kunz (Image-Guided Procedures, 2019)

An End-to-End Solution for Automatic Contouring of Tumor Region in Intraoperative Images of Breast Lumpectomy. - Justin Gerolami; Victoria Wu; Paolo Nasute Fauerbach; Doris Jabs; Cecil Jay Engel; John F. Rudan; Shaila Merchant; Ross Walker; Emran Mohammad Abu Anas; Purang Abolmaesumi; Gabor Fichtinger; Tamas Ungi; et al. (EMBC, 2020)

Improved Resection Margins in Surgical Oncology Using Intraoperative Mass Spectrometry. - Amoon Jamzad; Alireza Sedghi; Alice M. L. Santilli; Natasja N. Y. Janssen; Martin Kaufmann; Kevin Yi Mi Ren; Kaitlin Vanderbeck; Ami Wang; Doug McKay; John F. Rudan; Gabor Fichtinger; Parvin Mousavi (MICCAI (3), 2020)

Classification of tumor signatures from electrosurgical vapors using mass spectrometry and machine learning: a feasibility study. - Laura Connolly; Amoon Jamzad; Martin Kaufmann; Rachel Rubino; Alireza Sedghi; Tamas Ungi; Mark Asselin; Scott Yam; John F. Rudan; Christopher Nicol; Gabor Fichtinger; Parvin Mousavi (Image-Guided Procedures, 2020)

Intraoperative integration of structured light scanning for automatic tissue classification: a feasibility study. - Brandon Chan; John F. Rudan; Parvin Mousavi; Manuela Kunz (Int. J. Comput. Assist. Radiol. Surg., 2020)

Navigated tissue characterization during skin cancer surgery. - Natasja N. Y. Janssen; Martin Kaufmann; Alice M. L. Santilli; Amoon Jamzad; Kaitlin Vanderbeck; Kevin Yi Mi Ren; Tamas Ungi; Parvin Mousavi; John F. Rudan; Doug McKay; Ami Wang; Gabor Fichtinger (Int. J. Comput. Assist. Radiol. Surg., 2020)

Perioperative margin detection in basal cell carcinoma using a deep learning framework: a feasibility study. - Alice M. L. Santilli; Amoon Jamzad; Natasja N. Y. Janssen; Martin Kaufmann; Laura Connolly; Kaitlin Vanderbeck; Ami Wang; Doug McKay; John F. Rudan; Gabor Fichtinger; Parvin Mousavi (Int. J. Comput. Assist. Radiol. Surg., 2020)

Self-Supervised Learning For Detection Of Breast Cancer In Surgical Margins With Limited Data. - Alice M. L. Santilli; Amoon Jamzad; Alireza Sedghi; Martin Kaufmann; Shaila Merchant; Cecil Jay Engel; Kathryn Logan; Julie Wallis; Natasja N. Y. Janssen; Sonal Varma; Gabor Fichtinger; John F. Rudan; et al. (ISBI, 2021)

Graph Transformers for Characterization and Interpretation of Surgical Margins. - Amoon Jamzad; Alice M. L. Santilli; Faranak Akbarifar; Martin Kaufmann; Kathryn Logan; Julie Wallis; Kevin Yi Mi Ren; Shaila Merchant; Cecil Jay Engel; Sonal Varma; Gabor Fichtinger; John F. Rudan; et al. (MICCAI (7), 2021)

Graph-based analysis of mass spectrometry data for tissue characterization with application in basal cell carcinoma surgery. - Faranak Akbarifar; Amoon Jamzad; Alice M. L. Santilli; M. Kauffman; Natasja N. Y. Janssen; Laura Connolly; Kevin Yi Mi Ren; Kaitlin Vanderbeck; Ami Wang; Doug McKay; John F. Rudan; Gabor Fichtinger; et al. (Image-Guided Procedures, 2021)

Domain adaptation and self-supervised learning for surgical margin detection. - Alice M. L. Santilli; Amoon Jamzad; Alireza Sedghi; Martin Kaufmann; Kathryn Logan; Julie Wallis; Kevin Yi Mi Ren; Natasja N. Y. Janssen; Shaila Merchant; Cecil Jay Engel; Doug McKay; Sonal Varma; et al. (Int. J. Comput. Assist. Radiol. Surg., 2021)

Combined Mass Spectrometry and Histopathology Imaging for Perioperative Tissue Assessment in Cancer Surgery. - Laura Connolly; Amoon Jamzad; Martin Kaufmann; Catriona E. Farquharson; Kevin Yi Mi Ren; John F. Rudan; Gabor Fichtinger; Parvin Mousavi (J. Imaging, 2021)

Feasibility of combined optical and acoustic imaging for surgical cavity scanning. - Laura Connolly; Amoon Jamzad; Arash Nikniazi; Rana Poushimin; Jean-Michel Nunzi; John F. Rudan; Gabor Fichtinger; Parvin Mousavi (Image-Guided Procedures, 2022)

Phase recognition and cautery localization in basal cell carcinoma surgical videos. - Lucas March; Jessica Robin Rodgers; Amoon Jamzad; Alice M. L. Santilli; Rebecca Hisey; Doug McKay; John F. Rudan; Martin Kaufmann; Kevin Yi Mi Ren; Gabor Fichtinger; Parvin Mousavi (Image-Guided Procedures, 2022)

Uncertainty estimation for margin detection in cancer surgery using mass spectrometry. - Fahimeh Fooladgar; Amoon Jamzad; Laura Connolly; Alice M. L. Santilli; Martin Kaufmann; Kevin Yi Mi Ren; Purang Abolmaesumi; John F. Rudan; Doug McKay; Gabor Fichtinger; Parvin Mousavi (Int. J. Comput. Assist. Radiol. Surg., 2022)

Real-time automatic tumor segmentation for ultrasound-guided breast-conserving surgery navigation. - Zoe Hu; Paola V. Nasute Fauerbach; Chris Yeung; Tamas Ungi; John F. Rudan; Cecil Jay Engel; Parvin Mousavi; Gabor Fichtinger; Doris Jabs (Int. J. Comput. Assist. Radiol. Surg., 2022)

Sensor-Based Automated Detection of Electrosurgical Cautery States. - Joshua Ehrlich; Amoon Jamzad; Mark Asselin; Jessica Robin Rodgers; Martin Kaufmann; Tamás Haidegger; John F. Rudan; Parvin Mousavi; Gabor Fichtinger; Tamas Ungi (Sensors, 2022)

Application of Intraoperative Mass Spectrometry and Data Analytics for Oncological Margin Detection, A Review. - Alice Maria Leondina Santilli; Kevin Yi Mi Ren; Richard Oleschuk; Martin Kaufmann; John F. Rudan; Gabor Fichtinger; Parvin Mousavi (IEEE Trans. Biomed. Eng., 2022)

Bridging Ex-Vivo Training and Intra-operative Deployment for Surgical Margin Assessment with Evidential Graph Transformer. - Amoon Jamzad; Fahimeh Fooladgar; Laura Connolly; Dilakshan Srikanthan; Ayesha Syeda; Martin Kaufmann; Kevin Yi Mi Ren; Shaila Merchant; Cecil Jay Engel; Sonal Varma; Gabor Fichtinger; John F. Rudan; et al. (MICCAI (7), 2023)

Determining the time-delay of a mass spectrometry-based tissue sensor. - Josh Ehrlich; Chris Yeung; Martin Kaufman; Amoon Jamzad; John F. Rudan; Parvin Mousavi; Gabor Fichtinger; Tamas Ungi (Image-Guided Procedures, 2023)

ViPRE: an open-source software implementation for end-to-end analysis of mass spectrometry data. - Hanad Elmi; Amoon Jamzad; Mackenzie Sharp; Jessica R. Rodgers; Martin Kaufmann; Tamara Jamaspishvili; Rachael Iseman; David Berman; John F. Rudan; Gabor Fichtinger; Parvin Mousavi (Image-Guided Procedures, 2023)

Cautery tool state detection using deep learning on intraoperative surgery videos. - Lucas March; Jessica R. Rodgers; Rebecca Hisey; Amoon Jamzad; Alice M. L. Santilli; Doug McKay; John F. Rudan; Martin Kaufmann; Kevin Yi Mi Ren; Gabor Fichtinger; Parvin Mousavi (Image-Guided Procedures, 2023)

Tracked tissue sensing for tumor bed inspection. - David Morton; Laura Connolly; Leah A. Groves; Kyle Sunderland; Amoon Jamzad; John F. Rudan; Gabor Fichtinger; Tamas Ungi; Parvin Mousavi (Image-Guided Procedures, 2023)

Navigated surgical resection cavity inspection for breast conserving surgery. - Olivia Radcliffe; Laura Connolly; Tamas Ungi; Caitlin T. Yeo; John F. Rudan; Gabor Fichtinger; Parvin Mousavi (Image-Guided Procedures, 2023)

Attention-based multi-instance learning for improved glioblastoma detection using mass spectrometry. - Dilakshan Srikanthan; Martin Kaufmann; Amoon Jamzad; Ayesha Syeda; Alice M. L. Santilli; Alireza Sedghi; Gabor Fichtinger; Jamie Purzner; John F. Rudan; Teresa Purzner; Parvin Mousavi (Image-Guided Procedures, 2023)

Self-supervised learning and uncertainty estimation for surgical margin detection. - Ayesha Syeda; Fahimeh Fooladgar; Amoon Jamzad; Dilakshan Srikanthan; Martin Kaufmann; Kevin Yi Mi Ren; Cecil Jay Engel; Ross Walker; Shaila Merchant; Doug McKay; Sonal Varma; Gabor Fichtinger; et al. (Image-Guided Procedures, 2023)

Cautery trajectory analysis for evaluation of resection margins in breast-conserving surgery. - Chris Yeung; Joshua Ehrlich; Amoon Jamzad; Martin Kaufmann; John F. Rudan; Cecil Jay Engel; Parvin Mousavi; Tamas Ungi; Gabor Fichtinger (Image-Guided Procedures, 2023)

Towards Improving Surgical Margins in Tumour Resection Using Mass Spectrometry Imaging. - Jade Warren; Amoon Jamzad; Tamara Jamaspishvili; Rachael Iseman; Ayesha Syeda; Martin Kaufmann; John F. Rudan; Gabor Fichtinger; David M. Berman; Parvin Mousavi (CCECE, 2024)

ImSpect: Image-driven self-supervised learning for surgical margin evaluation with mass spectrometry. - Laura Connolly; Fahimeh Fooladgar; Amoon Jamzad; Martin Kaufmann; Ayesha Syeda; Kevin Yi Mi Ren; Purang Abolmaesumi; John F. Rudan; Doug McKay; Gabor Fichtinger; Parvin Mousavi (Int. J. Comput. Assist. Radiol. Surg., 2024)

From quantitative metrics to clinical success: assessing the utility of deep learning for tumor segmentation in breast surgery. - Chris Yeung; Tamas Ungi; Zoe Hu; Amoon Jamzad; Martin Kaufmann; Ross Walker; Shaila Merchant; Cecil Jay Engel; Doris Jabs; John F. Rudan; Parvin Mousavi; Gabor Fichtinger (Int. J. Comput. Assist. Radiol. Surg., 2024)

FACT: foundation model for assessing cancer tissue margins with mass spectrometry. - Mohammad Farahmand; Amoon Jamzad; Fahimeh Fooladgar; Laura Connolly; Martin Kaufmann; Kevin Yi Mi Ren; John F. Rudan; Doug McKay; Gabor Fichtinger; Parvin Mousavi (Int. J. Comput. Assist. Radiol. Surg., 2025)