Heuristics for the Gene-Duplication Problem: A Theta ( n ) Speed-Up for the Local Search. - Mukul S. Bansal; J. Gordon Burleigh; Oliver Eulenstein; André Wehe (RECOMB, 2007)

Locating Multiple Gene Duplications through Reconciled Trees. - J. Gordon Burleigh; Mukul S. Bansal; André Wehe; Oliver Eulenstein (RECOMB, 2008)

DupTree: a program for large-scale phylogenetic analyses using gene tree parsimony. - André Wehe; Mukul S. Bansal; J. Gordon Burleigh; Oliver Eulenstein (Bioinform., 2008)

Triplet supertree heuristics for the tree of life. - Harris T. Lin; J. Gordon Burleigh; Oliver Eulenstein (BMC Bioinform., 2009)

Locating Large-Scale Gene Duplication Events through Reconciled Trees: Implications for Identifying Ancient Polyploidy Events in Plants. - John Gordon Burleigh; Mukul S. Bansal; André Wehe; Oliver Eulenstein (J. Comput. Biol., 2009)

Inferring species trees from gene duplication episodes. - J. Gordon Burleigh; Mukul S. Bansal; Oliver Eulenstein; Todd J. Vision (BCB, 2010)

Triplet-Supertrees constructed from Minimum Triplet Presentations. - Max Homilius; John Gordon Burleigh; Oliver Eulenstein (BICoB, 2010)

Scaling the Gene Duplication Problem Towards the Tree of Life. - André Wehe; John Gordon Burleigh (BICoB, 2010)

Robinson-Foulds Supertrees. - Mukul S. Bansal; J. Gordon Burleigh; Oliver Eulenstein; David Fernández-Baca (Algorithms Mol. Biol., 2010)

Efficient genome-scale phylogenetic analysis under the duplication-loss and deep coalescence cost models. - Mukul S. Bansal; J. Gordon Burleigh; Oliver Eulenstein (BMC Bioinform., 2010)

Algorithms for Rapid Error Correction for the Gene Duplication Problem. - Ruchi Chaudhary; J. Gordon Burleigh; Oliver Eulenstein (ISBRA, 2011)

Fast Local Search for Unrooted Robinson-Foulds Supertrees. - Ruchi Chaudhary; J. Gordon Burleigh; David Fernández-Baca (ISBRA, 2011)

The Deep Coalescence Consensus Tree Problem is Pareto on Clusters. - Harris T. Lin; J. Gordon Burleigh; Oliver Eulenstein (ISBRA, 2011)

An ILP solution for the gene duplication problem. - Wen-Chieh Chang 002; J. Gordon Burleigh; David Fernández-Baca; Oliver Eulenstein (BMC Bioinform., 2011)

Maximum likelihood models and algorithms for gene tree evolution with duplications and losses. - Pawel Górecki 001; J. Gordon Burleigh; Oliver Eulenstein (BMC Bioinform., 2011)

GTP Supertrees from Unrooted Gene Trees: Linear Time Algorithms for NNI Based Local Searches. - Pawel Górecki 001; J. Gordon Burleigh; Oliver Eulenstein (ISBRA, 2012)

Algorithms for Knowledge-Enhanced Supertrees. - André Wehe; J. Gordon Burleigh; Oliver Eulenstein (ISBRA, 2012)

Efficient error correction algorithms for gene tree reconciliation based on duplication, duplication and loss, and deep coalescence. - Ruchi Chaudhary; J. Gordon Burleigh; Oliver Eulenstein (BMC Bioinform., 2012)

Consensus properties for the deep coalescence problem and their application for scalable tree search. - Harris T. Lin; J. Gordon Burleigh; Oliver Eulenstein (BMC Bioinform., 2012)

A scalable method for identifying frequent subtrees in sets of large phylogenetic trees. - Avinash Ramu; Tamer Kahveci; J. Gordon Burleigh (BMC Bioinform., 2012)

Inferring species trees from incongruent multi-copy gene trees using the Robinson-Foulds distance. - Ruchi Chaudhary; John Gordon Burleigh; David Fernández-Baca (Algorithms Mol. Biol., 2013)

Stability analysis of phylogenetic trees. - Saad I. Sheikh; Tamer Kahveci; Sanjay Ranka; J. Gordon Burleigh (Bioinform., 2013)

Efficient Algorithms for Knowledge-Enhanced Supertree and Supermatrix Phylogenetic Problems. - André Wehe; J. Gordon Burleigh; Oliver Eulenstein (IEEE ACM Trans. Comput. Biol. Bioinform., 2013)

Extracting phylogenetic signals from multi-labeled gene trees and its significance for species tree construction. - Ryan Cobb; Rasha Elhesha; J. Gordon Burleigh; Tamer Kahveci (BCB, 2014)

Constructing and Employing Tree Alignment Graphs for Phylogenetic Synthesis. - Ruchi Chaudhary; David Fernández-Baca; J. Gordon Burleigh (AlCoB, 2015)

MulRF: a software package for phylogenetic analysis using multi-copy gene trees. - Ruchi Chaudhary; David Fernández-Baca; John Gordon Burleigh (Bioinform., 2015)

A Natural Language Processing Pipeline to Extract Phenotypic Data from Formal Taxonomic Descriptions with a Focus on Flagellate Plants. - Lorena Endara; J. Gordon Burleigh; Laurel Cooper; Pankaj Jaiswal; Marie-Angélique Laporte; Hong Cui (ICBO, 2018)