Automated Object Tracing for Biomedical Image Segmentation Using a Deep Convolutional Neural Network. - Erica M. Rutter; John H. Lagergren; Kevin B. Flores (MICCAI (4), 2018)

A Convolutional Neural Network Method for Boundary Optimization Enables Few-Shot Learning for Biomedical Image Segmentation. - Erica M. Rutter; John H. Lagergren; Kevin B. Flores (DART/MIL3ID@MICCAI, 2019)

A Simple Deconvolutional Mechanism for Point Clouds and Sparse Unordered Data (Student Abstract). - Thomas Paniagua; John H. Lagergren; Greg Foderaro (AAAI, 2020)

Region Growing with Convolutional Neural Networks for Biomedical Image Segmentation. - John H. Lagergren; Erica Rutter; Kevin B. Flores (CoRR, 2020)

Biologically-informed neural networks guide mechanistic modeling from sparse experimental data. - John H. Lagergren; John T. Nardini; Ruth E. Baker; Matthew J. Simpson; Kevin B. Flores (PLoS Comput. Biol., 2020)

Longitudinal Effects on Plant Species Involved in Agriculture and Pandemic Emergence Undergoing Changes in Abiotic Stress. - Mikaela Cashman; Verónica G. Melesse Vergara; John H. Lagergren; Matthew Lane; Jean Merlet; Mikaela Atkinson; Jared Streich; Christopher E. Bradburne; Raina Plowright; Wayne Joubert; Daniel A. Jacobson (PASC, 2023)

Data-Driven Whole-Genome Clustering to Detect Geospatial, Temporal, and Functional Trends in SARS-CoV-2 Evolution. - Jean Merlet; John H. Lagergren; Verónica Melesse Vergara; Mikaela Cashman; Christopher E. Bradburne; Raina Plowright; Emily Gurley; Wayne Joubert; Daniel A. Jacobson (PASC, 2023)

Few-Shot Learning Enables Population-Scale Analysis of Leaf Traits in Populus trichocarpa. - John H. Lagergren; Mirko Pavicic; Hari B. Chhetri; Larry M. York; P. Doug Hyatt; David Kainer; Erica M. Rutter; Kevin B. Flores; Gail Taylor; Daniel A. Jacobson; Jared Streich (CoRR, 2023)

FOCUS: Fused Observation of Channels for Unveiling Spectra. - Xi Xiao; Aristeidis Tsaris; Anika Tabassum; John H. Lagergren; Larry M. York; Tianyang Wang; Xiao Wang 004 (CoRR, 2025)