Emerging Challenges in Computational Topology - Marshall W. Bern; David Eppstein; Pankaj K. Agarwal; Nina Amenta; L. Paul Chew; Tamal K. Dey; David P. Dobkin; Herbert Edelsbrunner; Cindy Grimm; Leonidas J. Guibas; John Harer; Joel Hass; et al. (CoRR, 1999)

Hierarchical morse complexes for piecewise linear 2-manifolds. - Herbert Edelsbrunner; John Harer; Afra Zomorodian (SCG, 2001)

Minimal Trap Design. - Pankaj K. Agarwal; Anne D. Collins; John Harer (ICRA, 2001)

Morse-smale complexes for piecewise linear 3-manifolds. - Herbert Edelsbrunner; John Harer; Vijay Natarajan; Valerio Pascucci (SCG, 2003)

HPRM: a hierarchical PRM. - Anne D. Collins; Pankaj K. Agarwal; John Harer (ICRA, 2003)

Hierarchical Morse - Smale Complexes for Piecewise Linear 2-Manifolds. - Herbert Edelsbrunner; John Harer; Afra Zomorodian (Discret. Comput. Geom., 2003)

Time-varying reeb graphs for continuous space-time data. - Herbert Edelsbrunner; John Harer; Ajith Mascarenhas; Valerio Pascucci (SCG, 2004)

Local and Global Comparison of Continuous Functions. - Herbert Edelsbrunner; John Harer; Vijay Natarajan; Valerio Pascucci (IEEE Visualization, 2004)

Loops in Reeb Graphs of 2-Manifolds. - Kree Cole-McLaughlin; Herbert Edelsbrunner; John Harer; Vijay Natarajan; Valerio Pascucci (Discret. Comput. Geom., 2004)

Extreme Elevation on a 2-Manifold. - Pankaj K. Agarwal; Herbert Edelsbrunner; John Harer; Yusu Wang 001 (Discret. Comput. Geom., 2006)

Inferring Local Homology from Sampled Stratified Spaces. - Paul Bendich; David Cohen-Steiner; Herbert Edelsbrunner; John Harer; Dmitriy Morozov (FOCS, 2007)

Alpha-Beta Witness Complexes. - Dominique Attali; Herbert Edelsbrunner; John Harer; Yuriy Mileyko (WADS, 2007)

Stability of Persistence Diagrams. - David Cohen-Steiner; Herbert Edelsbrunner; John Harer (Discret. Comput. Geom., 2007)

Reeb spaces of piecewise linear mappings. - Herbert Edelsbrunner; John Harer; Amit K. Patel (SCG, 2008)

Time-varying Reeb graphs for continuous space-time data. - Herbert Edelsbrunner; John Harer; Ajith Mascarenhas; Valerio Pascucci; Jack Snoeyink (Comput. Geom., 2008)

The Persistent Morse Complex Segmentation of a 3-Manifold. - Herbert Edelsbrunner; John Harer (3DPH, 2009)

Persistent homology for kernels, images, and cokernels. - David Cohen-Steiner; Herbert Edelsbrunner; John Harer; Dmitriy Morozov (SODA, 2009)

Extending Persistence Using Poincaré and Lefschetz Duality. - David Cohen-Steiner; Herbert Edelsbrunner; John Harer (Found. Comput. Math., 2009)

Computational Topology - an Introduction. - Herbert Edelsbrunner; John Harer (American Mathematical Society, 2010)

Lipschitz Functions Have Lp-Stable Persistence. - David Cohen-Steiner; Herbert Edelsbrunner; John Harer; Yuriy Mileyko (Found. Comput. Math., 2010)

Persistent Intersection Homology. - Paul Bendich; John Harer (Found. Comput. Math., 2011)

Failure filtrations for fenced sensor networks. - Elizabeth Munch; Michael Shapiro; John Harer (Int. J. Robotics Res., 2012)

Design and analysis of large-scale biological rhythm studies: a comparison of algorithms for detecting periodic signals in biological data. - Anastasia Deckard; Ron C. Anafi; John B. Hogenesch; Steven B. Haase; John Harer (Bioinform., 2013)

Probabilistic Fréchet Means and Statistics on Vineyards. - Elizabeth Munch; Paul Bendich; Katharine Turner; Sayan Mukherjee 001; Jonathan Mattingly; John Harer (CoRR, 2013)

Fréchet Means for Distributions of Persistence Diagrams. - Katharine Turner; Yuriy Mileyko; Sayan Mukherjee 001; John Harer (Discret. Comput. Geom., 2014)

Multi-scale local shape analysis and feature selection in machine learning applications. - Paul Bendich; Ellen Gasparovic; John Harer; Rauf Izmailov; Linda Ness (IJCNN, 2015)

SW1PerS: Sliding windows and 1-persistence scoring; discovering periodicity in gene expression time series data. - Jose A. Perea; Anastasia Deckard; Steven B. Haase; John Harer (BMC Bioinform., 2015)

Sliding Windows and Persistence: An Application of Topological Methods to Signal Analysis. - Jose A. Perea; John Harer (Found. Comput. Math., 2015)

Geometric Models for Musical Audio Data. - Paul Bendich; Ellen Gasparovic; John Harer; Christopher J. Tralie (SoCG, 2016)

Scaffoldings and Spines: Organizing High-Dimensional Data Using Cover Trees, Local Principal Component Analysis, and Persistent Homology. - Paul Bendich; Ellen Gasparovic; Christopher J. Tralie; John Harer (CoRR, 2016)

Topological and statistical behavior classifiers for tracking applications. - Paul Bendich; Sang Peter Chin; Jesse Clarke; Jonathan deSena; John Harer; Elizabeth Munch; Andrew Newman; David Porter; David Rouse; Nate Strawn; Adam Watkins (IEEE Trans. Aerosp. Electron. Syst., 2016)

Supervised Learning of Labeled Pointcloud Differences via Cover-Tree Entropy Reduction. - Abraham D. Smith; Paul Bendich; John Harer; Jay Hineman (CoRR, 2017)

Geometric Cross-Modal Comparison of Heterogeneous Sensor Data. - Christopher J. Tralie; Abraham D. Smith; Nathan Borggren; Jay Hineman; Paul Bendich; Peter Zulch; John Harer (CoRR, 2017)

Multi-scale Geometric Summaries for Similarity-based Sensor Fusion. - Christopher J. Tralie; Paul Bendich; John Harer (CoRR, 2018)

Hyperparameter Optimization of Topological Features for Machine Learning Applications. - Francis C. Motta; John Harer; Nick Leiby; Franco Marinozzi; Scott Novotney; Gabe Rocklin; Jed Singer; Devin Strickland; Matt Vaughn; Christopher J. Tralie; Rossella Bedini; Fabiano Bini; et al. (ICMLA, 2019)