The reliability of LEC telephone networks. - Richard Fagerstrom; John Healy (IEEE Commun. Mag., 1993)

GapCoder automates the use of indel characters in phylogenetic analysis. - Nelson D. Young; John Healy (BMC Bioinform., 2003)

Stochastic Search for Costas Arrays. - Scott Rickard; John Healy (CISS, 2006)

Swordfish: an unsupervised Ngram based approach to morphological analysis. - Chris Jordan; John Healy; Vlado Keselj (SIGIR, 2006)

Characterization of Graphs Using Degree Cores. - John Healy; Jeannette C. M. Janssen; Evangelos E. Milios; William Aiello (WAW, 2006)

Validation of S. Pombe Sequence Assembly by Microarray Hybridization. - Joseph West; John Healy; Michael Wigler; William Casey; Bud Mishra (J. Comput. Biol., 2006)

Error Tolerant Indexing and Alignment of Short Reads with Covering Template Families. - Eldar Giladi; John Healy; Gene Myers; Chris Hart; Philipp Kapranov; Doron Lipson; Steve Roels; Edward C. Thayer; Stan Letovsky (J. Comput. Biol., 2010)

Fast and Accurate Genome Anchoring Using Fuzzy Hash Maps. - John Healy; Desmond Chambers (PACBB, 2011)

An Integrated Approach to Comparative Assembly. - John Healy; Desmond Chambers (IWBBIO, 2014)

Approximate k-Mer Matching UsingFuzzy Hash Maps. - John Healy; Desmond Chambers (IEEE ACM Trans. Comput. Biol. Bioinform., 2014)

FLAK: Ultra-Fast Fuzzy Whole Genome Alignment. - John Healy (PACBB, 2016)

Subgraphs in Non-uniform Random Hypergraphs. - Megan Dewar; John Healy; Xavier Pérez-Giménez; Pawel Pralat; John Proos; Benjamin Reiniger; Kirill Ternovsky (WAW, 2016)

Accelerated Hierarchical Density Based Clustering. - Leland McInnes; John Healy (ICDM Workshops, 2017)

hdbscan: Hierarchical density based clustering. - Leland McInnes; John Healy; Steve Astels (J. Open Source Softw., 2017)

UMAP: Uniform Manifold Approximation and Projection for Dimension Reduction. - Leland McInnes; John Healy (CoRR, 2018)

Subhypergraphs in non-uniform random hypergraphs. - Megan Dewar; Kirill Ternovsky; Benjamin Reiniger; John Proos; Pawel Pralat; Xavier Pérez-Giménez; John Healy (Internet Math., 2018)

UMAP: Uniform Manifold Approximation and Projection. - Leland McInnes; John Healy; Nathaniel Saul; Lukas Großberger (J. Open Source Softw., 2018)

Identification of Antimicrobial Peptides from Macroalgae with Machine Learning. - Michela Caprani; Orla Slattery; Joan O'Keeffe; John Healy (PACBB, 2020)

Space Debris Detection and Resident Space Object (RSO) Classification using Polarimetric Discriminants. - Bharath Kumar Reddy Mandadi; John Healy; Suman Shrestha; Martin Nowak; Anthony Beninati; Nicolas Douard; Alec Puran; Alexandros Kerwick; Yi Wang 030; Georgios K. Giakos (IST, 2021)

Using Reduced Amino-Acid Alphabets and Simulated Annealing to Identify Antimicrobial Peptides. - John Healy; Michela Caprani; Orla Slattery; Joan O'Keeffe (PACBB, 2021)

Automatic Segmentation of the Paediatric Femoral Head. - Cliodhna Gartland; Ellen Curran; John Healy; Rosanne-Sara Lynham; Niamh C. Nowlan; Connor Green; Stephen J. Redmond (EMBC, 2023)

Gauging the Capability of Artificial Intelligence Chatbot Tools to Answer Textbook Coursework Exercises in Circuit Design Education. - Yevhenii Mormul; Jan Przybyszewski; Teerachot Siriburanon; John Healy; Paul Cuffe (ITHET, 2024)

A Threat Assessment Framework for Screening the Integrity of University Assessments in the Era of Large Language Models. - Alan Hickey; Cathal Ó Faoláin; John Healy; Kevin Nolan; Emer Doheny; Paul Cuffe (RTSI, 2024)

Soft Skills as Predictors of Success in Software Engineering Through Analysis of Confidence, Adaptability and Time Management. - Ontiretse Ishmael; Etain Kiely; John Healy (ECSEE, 2025)