Computer simulation of biological interactions and reactivity. - John J. Wendoloski; Zelda R. Wasserman; F. R. Salemme (J. Comput. Aided Mol. Des., 1988)

Electrostatic binding energy calculation using the finite difference solution to the linearized Poisson-Boltzmann equation: Assessment of its accuracy. - Jian Shen; John J. Wendoloski (J. Comput. Chem., 1996)

Prediction of Solvation Free Energies of Small Organic Molecules: Additive-Constitutive Models Based on Molecular Fingerprints and Atomic Constants. - Vellarkad N. Viswanadhan; Arup K. Ghose; U. Chandra Singh; John J. Wendoloski (J. Chem. Inf. Comput. Sci., 1999)