Making of The Superpunch. - George Burshukov; Kody Sabourin; Masuo Suzuki; Oystein Larsen; Tadao Mihashi; Ken Faiman; Scot Schinderman; Oliver James; John Jack (SIGGRAPH Sketches, 2004)

Effects of HIV-1 Proteins on the Fas-Mediated Apoptotic Signaling Cascade: A Computational Study of Latent CD4+ T Cell Activation. - John Jack; Andrei Paun; Alfonso Rodríguez-Patón (Workshop on Membrane Computing, 2008)

Discrete Nondeterministic Modeling of the Fas Pathway. - John Jack; Alfonso Rodríguez-Patón; Oscar H. Ibarra; Andrei Paun (Int. J. Found. Comput. Sci., 2008)

The Nondeterministic Waiting Time Algorithm: A Review - John Jack; Andrei Paun (DCFS, 2009)

Discrete Modeling of Biochemical Signaling with Memory Enhancement. - John Jack; Andrei Paun (Trans. Comp. Sys. Biology, 2009)

Poster: Biochemical signaling: A discrete simulation with memory enhancement. - Andrei Paun; Mihaela Paun; Alfonso Rodríguez-Patón; John Jack (ICCABS, 2011)

Simulating Quantitative Cellular Responses Using Asynchronous Threshold Boolean Network Ensembles. - John Jack; John Wambaugh; Imran Shah (BMC Syst. Biol., 2011)

A review of the nondeterministic waiting time algorithm. - John Jack; Andrei Paun; Alfonso Rodríguez-Patón (Nat. Comput., 2011)