Genes@Work: an efficient algorithm for pattern discovery and multivariate feature selection in gene expression data. - Jorge Lepre; John Jeremy Rice; Yuhai Tu; Gustavo Stolovitzky (Bioinform., 2004)

Reconstructing biological networks using conditional correlation analysis. - John Jeremy Rice; Yuhai Tu; Gustavo Stolovitzky (Bioinform., 2005)

A spatially detailed myofilament model as a basis for large-scale biological simulations. - Jagir Hussan; Pieter P. deTombe; John Jeremy Rice (IBM J. Res. Dev., 2006)

Spatially-Compressed Cardiac Myofilament Models Generate Hysteresis that Is Not Found in Real Muscle. - John Jeremy Rice; Yuhai Tu; Corrado Poggesi; Pieter P. deTombe (Pacific Symposium on Biocomputing, 2008)

Petascale computation performance of lightweight multiscale cardiac models using hybrid programming models. - Bernard J. Pope; Blake G. Fitch; Michael C. Pitman; John Jeremy Rice; Matthias Reumann (EMBC, 2011)

Performance of Hybrid Programming Models for Multiscale Cardiac Simulations: Preparing for Petascale Computation. - Bernard J. Pope; Blake G. Fitch; Michael Pitman; John Jeremy Rice; Matthias Reumann (IEEE Trans. Biomed. Eng., 2011)

Toward real-time modeling of human heart ventricles at cellular resolution: simulation of drug-induced arrhythmias. - Arthur A. Mirin; David F. Richards; James N. Glosli; Erik W. Draeger; Bor Chan; Jean-Luc Fattebert; William D. Krauss; Tomas Oppelstrup; John Jeremy Rice; John A. Gunnels; Viatcheslav Gurev; Changhoan Kim; et al. (SC, 2012)

Industrial methodology for process verification in research (IMPROVER): toward systems biology verification. - Pablo Meyer 001; Julia Hoeng; John Jeremy Rice; Raquel Norel; Jörg Sprengel; Katrin Stolle; Thomas Bonk; Stephanie Corthesy; Ajay K. Royyuru; Manuel C. Peitsch; Gustavo Stolovitzky (Bioinform., 2012)

Strengths and limitations of microarray-based phenotype prediction: lessons learned from the IMPROVER Diagnostic Signature Challenge. - Adi L. Tarca; Mario Lauria; Michael Unger; Erhan Bilal; Stéphanie Boué; Kushal Kumar Dey; Julia Hoeng; Heinz Koeppl; Florian Martin 002; Pablo Meyer 001; Preetam Nandy; Raquel Norel; et al. (Bioinform., 2013)

Science at LLNL with IBM Blue Gene/Q. - Brian Carnes; Bor Chan; Erik W. Draeger; Jean-Luc Fattebert; Larry Fried; James N. Glosli; William D. Krauss; Steve H. Langer; Rose McCallen; Arthur A. Mirin; Fady Najjar; Albert L. Nichols; et al. (IBM J. Res. Dev., 2013)

Papillary Muscles Contraction Does Not Change Ventricular Wall Mechanics. - John Jeremy Rice; Viatcheslav Gurev; James C. Korte; David F. Richards; Jean-Luc Fattebert; Omar Hafez (CinC, 2015)

T-wave Morphology Depends on Transmural Heterogeneity in a High- Resolution Human Left- Ventricular Wedge Model. - Massimo Walter Rivolta; Graham H. Bevan; Viatcheslav Gurev; John Jeremy Rice; Coeli M. Lopes; Jean-Philippe Couderc (CinC, 2015)

A crowd-sourcing approach for the construction of species-specific cell signaling networks. - Erhan Bilal; Theodore Sakellaropoulos; Challenge Participants; Ioannis N. Melas; Dimitris E. Messinis; Vincenzo Belcastro; Kahn Rhrissorrakrai; Pablo Meyer 001; Raquel Norel; Anita Iskandar; Elise Blaese; John Jeremy Rice; et al. (Bioinform., 2015)

Understanding the limits of animal models as predictors of human biology: lessons learned from the sbv IMPROVER Species Translation Challenge. - Kahn Rhrissorrakrai; Vincenzo Belcastro; Erhan Bilal; Raquel Norel; Carine Poussin; Carole Mathis; Rémi H. J. Dulize; Nikolai V. Ivanov; Leonidas G. Alexopoulos; John Jeremy Rice; Manuel C. Peitsch; Gustavo Stolovitzky; et al. (Bioinform., 2015)

Sensitivity Analysis of the QT and JTpeak Intervals from a High-resolution Human Left-ventricular Wedge Model. - Massimo Walter Rivolta; Roberto Sassi; Viatcheslav Gurev; John Jeremy Rice; Coeli M. Lopes; Jean-Philippe Couderc (CinC, 2017)

Estimating the probabilities of rare arrhythmic events in multiscale computational models of cardiac cells and tissue. - Mark A. Walker; Viatcheslav Gurev; John Jeremy Rice; Joseph L. Greenstein; Raimond L. Winslow (PLoS Comput. Biol., 2017)

Decomposition of complex movements into primitives for Parkinson's disease assessment. - Eleftheria Kyriaki Pissadaki; Avner G. S. Abrami; Stephen J. Heisig; Erhan Bilal; Marco Cavallo; Paul W. Wacnik; Michael Kelley Erb; Daniel R. Karlin; Peter R. Bergethon; Stephen P. Amato; Hao Zhang 090; Vesper L. Ramos; et al. (IBM J. Res. Dev., 2018)

Turning the Finger into a Writing Tool. - Katsuyuki Sakuma; Gaddi Blumrosen; John Jeremy Rice; Jeff Rogers; John U. Knickerbocker (EMBC, 2019)

Back to Finger-Writing: Fingertip Writing Technology Based on Pressure Sensing. - Gaddi Blumrosen; Katsuyuki Sakuma; John Jeremy Rice; John U. Knickerbocker (IEEE Access, 2020)