Easy Extraction of Terms and Definitions with OWL2TL. - John Judkins; Joseph Utecht; Mathias Brochhausen (ICBO/BioCreative, 2016)

OOSTT: a Resource for Analyzing the Organizational Structures of Trauma Centers and Trauma Systems. - Joseph Utecht; John Judkins; Mathias Brochhausen; Terra Colvin Jr.; J. Neil Otte; Nicholas Rogers; Robert Rose; Maria Alvi; Amanda Hicks; Jane Ball; Stephen M. Bowman; Robert T. Maxson; et al. (ICBO/BioCreative, 2016)

Toward a reliable and interoperable public repository for natural product drug interaction study data. - Richard D. Boyce; Isabelle Ragueneau-Majlessi; Jingjing Yu; Jessica Sontheimer; Chris Kinsella; Mathias Brochhausen; John Judkins; Bruce Pinkleton; Rebecca L. Cooney; Mary Paine; Jeannine McCune (AMIA, 2017)

Formalizing Evidence Type Definitions for Drug-Drug Interaction Studies to Improve Evidence Base Curation. - Joseph Utecht; Mathias Brochhausen; John Judkins; Jodi Schneider; Richard D. Boyce (MedInfo, 2017)

Developing User Personas to Aid in the Design of a User-Centered Natural Product-Drug Interaction Information Resource for Researchers. - Richard D. Boyce; Isabelle Ragueneau-Majlessi; Jingjing Yu; Jessica Sontheimer; Chris Kinsella; Eric Chou; Mathias Brochhausen; John Judkins; Brandon T. Gufford; Bruce Pinkleton; Rebecca L. Cooney; Mary Paine; et al. (AMIA, 2018)

Extending the DIDEO ontology to include entities from the natural product drug interaction domain of discourse. - John Judkins; Jessica Tay-Sontheimer; Richard D. Boyce; Mathias Brochhausen (J. Biomed. Semant., 2018)

OWLmaker: An Application for Generating OWL Files from Tabular Text. - Jie Zheng 001; John Judkins; Christian J. Stoeckert Jr. (ICBO, 2019)

Development and Validation of a Controlled Vocabulary: An OWL Representation of Organizational Structures of Trauma Centers and Trauma Systems. - Joseph Utecht; Jane Ball; Stephen M. Bowman; Jimm Dodd; John Judkins; Robert T. Maxson; Rosemary Nabaweesi; Rohit Pradhan; Nels D. Sanddal; Robert J. Winchell; Mathias Brochhausen (MedInfo, 2019)

Standardization of assay representation in the Ontology for Biomedical Investigations. - Randi Vita; Jie Zheng 001; Rebecca C. Jackson; Damion M. Dooley; James A. Overton; Mark A. Miller; Daniel C. Berrios; Richard H. Scheuermann; Yongqun He; Hande Küçük-McGinty; Mathias Brochhausen; Aisyah Yu Lin; et al. (Database J. Biol. Databases Curation, 2021)

VEuPathDB: the eukaryotic pathogen, vector and host bioinformatics resource center. - Beatrice Amos; Cristina Aurrecoechea; Matthieu Barba; Ana Barreto; Evelina Y. Basenko; Wojciech Bazant; Robert Belnap; Ann S. Blevins; Ulrike Böhme; John Brestelli; Brian P. Brunk; Mark J. Caddick; et al. (Nucleic Acids Res., 2022)

The Occupation Ontology (OccO): Building a Bridge between Global Occupational Standards. - John Beverley; Sam Smith; Matthew Diller; William D. Duncan; Jie Zheng 001; John W. Judkins; William R. Hogan; Robin McGill; Damion M. Dooley; Yongqun He (JOWO, 2023)