Accurate calculation of side chain packing and free energy with applications to protein molecular dynamics. - John M. Jumper; Nabil F. Faruk; Karl F. Freed; Tobin R. Sosnick (PLoS Comput. Biol., 2018)

Trajectory-based training enables protein simulations with accurate folding and Boltzmann ensembles in cpu-hours. - John M. Jumper; Nabil F. Faruk; Karl F. Freed; Tobin R. Sosnick (PLoS Comput. Biol., 2018)

Improved protein structure prediction using potentials from deep learning. - Andrew W. Senior; Richard Evans 001; John Jumper; James Kirkpatrick; Laurent Sifre; Tim Green; Chongli Qin; Augustin Zídek; Alexander W. R. Nelson; Alex Bridgland; Hugo Penedones; Stig Petersen; et al. (Nat., 2020)

Inferring a Continuous Distribution of Atom Coordinates from Cryo-EM Images using VAEs. - Dan Rosenbaum; Marta Garnelo; Michal Zielinski; Charlie Beattie; Ellen Clancy; Andrea Huber; Pushmeet Kohli; Andrew W. Senior; John Jumper; Carl Doersch; S. M. Ali Eslami; Olaf Ronneberger; et al. (CoRR, 2021)

AlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with high-accuracy models. - Mihaly Varadi; Stephen Anyango; Mandar S. Deshpande; Sreenath Nair; Cindy Natassia; Galabina Yordanova; David Yuan; Oana Stroe; Gemma Wood; Agata Laydon; Augustin Zídek; Tim Green; et al. (Nucleic Acids Res., 2022)

Accelerating Large Language Model Decoding with Speculative Sampling. - Charlie Chen; Sebastian Borgeaud; Geoffrey Irving; Jean-Baptiste Lespiau; Laurent Sifre; John Jumper (CoRR, 2023)