Comparing Java Agents and MPI for Writing Parallel Algorithms. - John Kochmar; Paul Nowoczynski; J. Ray Scott; Nathan Stone (PDPTA, 1999)

Alnilam: An Extensible Python-Based Job Scheduler. - John Kochmar; Paul Nowoczynski; J. Ray Scott; Jason Sommerfield; Nathan Stone (PDPTA, 2000)

Mass Storage on the Terascale Computing System. - Nathan Stone; J. Ray Scott; John Kochmar; Jason Sommerfield; Ravi Subramanya; Raghurama Reddy; Katie Vargo (MSS, 2001)

Terascale I/O Solutions. - Nathan Stone; John Kochmar; Paul Nowoczynski; J. Ray Scott; Derek Simmel; Jason Sommerfield; Chad Vizino (International Conference on Computational Science, 2003)

Custom Features of a Large Cluster Batch Scheduler. - Chad Vizino; John Kochmar; J. Ray Scott (PDPTA, 2005)