Partition algorithms for the doubly linked list. - John M. Boyer (ACM Southeast Regional Conference, 1990)

Stop Minding Your p's and q's: A Simplified O(n) Planar Embedding Algorithm. - John M. Boyer; Wendy J. Myrvold (SODA, 1999)

XFDL: Creating Electronic Commerce Transaction Records Using XML. - Barclay Blair; John M. Boyer (Comput. Networks, 1999)

Simplified O(n) algorithms for planar graph embedding, Kuratowski subgraph isolation, and related problems. - John M. Boyer (2001)

The XForms Computation Engine: Rationale, Theory and Implementation Experience. - John M. Boyer; Mikko Honkala (IMSA, 2002)

Stop Minding Your P's and Q's: Implementing a Fast and Simple DFS-Based Planarity Testing and Embedding Algorithm. - John M. Boyer; Pier Francesco Cortese; Maurizio Patrignani; Giuseppe Di Battista (GD, 2003)

Bulletproof business process automation: securing XML forms with document subset signatures. - John M. Boyer (XML Security, 2003)

Additional PC-Tree Planarity Conditions. - John M. Boyer (GD, 2004)

Lempel, Even, and Cederbaum Planarity Method. - John M. Boyer; Cristina G. Fernandes; Alexandre Noma; José Coelho de Pina (WEA, 2004)

On the Cutting Edge: Simplified O(n) Planarity by Edge Addition. - John M. Boyer; Wendy J. Myrvold (J. Graph Algorithms Appl., 2004)

A New Method for Efficiently Generating Planar Graph Visibility Representations. - John M. Boyer (GD, 2005)

Simple constant amortized time generation of fixed length numeric partitions. - John M. Boyer (J. Algorithms, 2005)

Interactive office documents: a new face for web 2.0 applications. - John M. Boyer (ACM Symposium on Document Engineering, 2008)

An office document mashup for document-centric business processes. - John M. Boyer; Eric Dunn; Maureen Kraft; Jun S. H. Liu; Mihir R. Shah; He Feng Su; Saurabh Tiwari 001 (ACM Symposium on Document Engineering, 2008)

Enriching the interactive user experience of open document format. - John M. Boyer; Charles Wiecha (ACM Symposium on Document Engineering, 2009)

A REST protocol and composite format for interactive web documents. - John M. Boyer; Charles Wiecha; Rahul P. Akolkar (ACM Symposium on Document Engineering, 2009)

Interactive Web Documents. - John M. Boyer; Charles Wiecha; Rahul P. Akolkar (Comput. Sci. Res. Dev., 2012)

Subgraph Homeomorphism via the Edge Addition Planarity Algorithm. - John M. Boyer (J. Graph Algorithms Appl., 2012)

Federating natural language question answering services of a cognitive enterprise data platform. - John M. Boyer (CASCON, 2017)

Natural language question answering in the financial domain. - John M. Boyer (CASCON, 2018)

On the Expressive Power of Declarative Constructs in Interactive Document Scripts. - John M. Boyer (DocEng, 2019)

Revising the Fellows-Kaschube $K_{3, 3}$ Search. - John M. Boyer (J. Graph Algorithms Appl., 2021)