A Data Parallel Implementation of the NCAR Community Climate Model (CCM2). - Steven W. Hammond; Richard D. Loft; John M. Dennis; Richard K. Sato (PP, 1995)

Implementation and Performance Issues of a Massively Parallel Atmospheric Model. - Steven W. Hammond; Richard D. Loft; John M. Dennis; Richard K. Sato (Parallel Comput., 1995)

Solving Nonlinear Integer Programs with a Subgradient Approach on Parallel Computers. - Robert E. Bixby; John M. Dennis; Zhijun Wu (Applications on Advanced Architecture Computers, 1996)

Interactive Direct Volume Rendering of Time-Varying Data. - John P. Clyne; John M. Dennis (VisSym, 1999)

Terascale spectral element dynamical core for atmospheric general circulation models. - Richard D. Loft; Stephen J. Thomas; John M. Dennis (SC, 2001)

Toward Memory-Efficient Linear Solvers. - Allison H. Baker; John M. Dennis; Elizabeth R. Jessup (VECPAR, 2002)

Parallel implementation issues: global versus local methods. - Stephen J. Thomas; Richard D. Loft; John M. Dennis (Comput. Sci. Eng., 2002)

Partitioning with Space-Filling Curves on the Cubed-Sphere. - John M. Dennis (IPDPS, 2003)

A Schwarz Preconditioner for the Cubed-Sphere. - Stephen J. Thomas; John M. Dennis; Henry M. Tufo; Paul F. Fischer (SIAM J. Sci. Comput., 2003)

Towards an Efficient and Scalable Discontinuous Galerkin Atmospheric Model. - John M. Dennis; Michael N. Levy; Ramachandran D. Nair; Henry M. Tufo; Theron Voran (IPDPS, 2005)

High-Resolution Mesh Convergence Properties and Parallel Efficiency of a Spectral Element Atmospheric Dynamical Core. - John M. Dennis; Aimé Fournier; William F. Spotz; Amik St.-Cyr; Mark A. Taylor; Stephen J. Thomas; Henry M. Tufo (Int. J. High Perform. Comput. Appl., 2005)

On Improving Linear Solver Performance: A Block Variant of GMRES. - Allison H. Baker; John M. Dennis; Elizabeth R. Jessup (SIAM J. Sci. Comput., 2006)

Inverse Space-Filling Curve Partitioning of a Global Ocean Model. - John M. Dennis (IPDPS, 2007)

Applying Automated Memory Analysis to Improve Iterative Algorithms. - John M. Dennis; Elizabeth R. Jessup (SIAM J. Sci. Comput., 2007)

Scaling climate simulation applications on the IBM Blue Gene/L system. - John M. Dennis; Henry M. Tufo (IBM J. Res. Dev., 2008)

SLAMM - Automating Memory Analysis for Numerical Algorithms. - John M. Dennis; Elizabeth R. Jessup; William M. Waite (LDTA, 2009)

Parallel high-resolution climate data analysis using swift. - Matthew Woitaszek; John M. Dennis; Taleena R. Sines (MTAGS@SC, 2011)

Performance of the community earth system model. - Patrick H. Worley; Arthur A. Mirin; Anthony P. Craig; Mark A. Taylor; John M. Dennis; Mariana Vertenstein (SC, 2011)

Establishing a Miniapp as a programmability proxy. - Andrew Stone; John M. Dennis; Michelle Strout (PPoPP, 2012)

On using virtual circuits for GridFTP transfers. - Zhengyang Liu 005; Malathi Veeraraghavan; Zhenzhen Yan; Chris Tracy; Jing Tie; Ian T. Foster; John M. Dennis; Jason Hick; Yee-Ting Li; W. Yang (SC, 2012)

CAM-SE: A scalable spectral element dynamical core for the Community Atmosphere Model. - John M. Dennis; Jim Edwards; Katherine J. Evans; Oksana Guba; Peter H. Lauritzen; Arthur A. Mirin; Amik St.-Cyr; Mark A. Taylor; Patrick H. Worley (Int. J. High Perform. Comput. Appl., 2012)

An application-level parallel I/O library for Earth system models. - John M. Dennis; Jim Edwards; Raymond M. Loy; Robert L. Jacob; Arthur A. Mirin; Anthony P. Craig; Mariana Vertenstein (Int. J. High Perform. Comput. Appl., 2012)

Computational performance of ultra-high-resolution capability in the Community Earth System Model. - John M. Dennis; Mariana Vertenstein; Patrick H. Worley; Arthur A. Mirin; Anthony P. Craig; Robert L. Jacob; Sheri A. Mickelson (Int. J. High Perform. Comput. Appl., 2012)

A Scalable Parallel LSQR Algorithm for Solving Large-Scale Linear System for Tomographic Problems: A Case Study in Seismic Tomography. - He Huang; John M. Dennis; Liqiang Wang; Po Chen (ICCS, 2013)

An optimized parallel LSQR algorithm for seismic tomography. - En-Jui Lee; He Huang; John M. Dennis; Po Chen; Liqiang Wang (Comput. Geosci., 2013)

A methodology for evaluating the impact of data compression on climate simulation data. - Allison H. Baker; Haiying Xu; John M. Dennis; Michael N. Levy; Doug Nychka; Sheri A. Mickelson; Jim Edwards; Mariana Vertenstein; Al Wegener (HPDC, 2014)

Light-weight parallel Python tools for earth system modeling workflows. - Kevin Paul; Sheri A. Mickelson; John M. Dennis; Haiying Xu; David Brown 006 (IEEE BigData, 2015)

A General Space-filling Curve Algorithm for Partitioning 2D Meshes. - Aparna Sasidharan; John M. Dennis; Marc Snir (HPCC/CSS/ICESS, 2015)

Performance search engine driven by prior knowledge of optimization. - Youngsung Kim; Pavol Cerný; John M. Dennis (ARRAY@PLDI, 2015)

Improving the scalability of the ocean barotropic solver in the community earth system model. - Yong Hu; Xiaomeng Huang; Allison H. Baker; Yu-heng Tseng; Frank O. Bryan; John M. Dennis; Guangwen Yang (SC, 2015)

Implementation of PFC and RCM for RoCEv2 Simulation in OMNeT++. - Qian Liu; Robert D. Russell; Fabrice Mizero; Malathi Veeraraghavan; John M. Dennis; Benjamin F. Jamroz (CoRR, 2015)

A new parallel python tool for the standardization of earth system model data. - Kevin Paul; Sheri A. Mickelson; John M. Dennis (IEEE BigData, 2016)

KGEN: A Python Tool for Automated Fortran Kernel Generation and Verification. - Youngsung Kim; John M. Dennis; Christopher Kerr; Raghu Raj Prasanna Kumar; Amogh Simha; Allison H. Baker; Sheri A. Mickelson (ICCS, 2016)

Towards Characterizing the Variability of Statistically Consistent Community Earth System Model Simulations. - Daniel Milroy; Allison H. Baker; Dorit Hammerling; John M. Dennis; Sheri A. Mickelson; Elizabeth R. Jessup (ICCS, 2016)

Minimal Aggregated Shared Memory Messaging on Distributed Memory Supercomputers. - Benjamin F. Jamroz; John M. Dennis (IPDPS, 2016)

Evaluating and Optimizing the NERSC Workload on Knights Landing. - Taylor Barnes; Brandon Cook 001; Jack Deslippe; Douglas Doerfler; Brian Friesen; Yun (Helen) He; Thorsten Kurth; Tuomas Koskela; Mathieu Lobet; Tareq M. Malas; Leonid Oliker; Andrey Ovsyannikov; et al. (PMBS@SC, 2016)

A Dynamic Congestion Management System for InfiniBand Networks. - Fabrice Mizero; Malathi Veeraraghavan; Qian Liu; Robert D. Russell; John M. Dennis (Supercomput. Front. Innov., 2016)

Assessing Representativeness of Kernels Using Descriptive Statistics. - Youngsung Kim; John M. Dennis; Christopher Kerr (CLUSTER, 2017)

A measurement study of congestion in an InfiniBand network. - Fatma Alali; Fabrice Mizero; Malathi Veeraraghavan; John M. Dennis (TMA, 2017)

An Integrated Tutorial on InfiniBand, Verbs, and MPI. - Patrick MacArthur; Qian Liu; Robert D. Russell; Fabrice Mizero; Malathi Veeraraghavan; John M. Dennis (IEEE Commun. Surv. Tutorials, 2017)

Investigating the Impact of Mixed Precision on Correctness for a Large Climate Code. - Daniel J. Milroy; Allison H. Baker; John M. Dennis; Andrew Gettelman (CORRECTNESS@SC, 2019)

Optimizing the HOMME dynamical core for multicore platforms. - John M. Dennis; Brian Dobbins; Christopher Kerr; Youngsung Kim (Int. J. High Perform. Comput. Appl., 2019)

Accelerate the Parameterization of Unified Microphysics Across Scales (PUMAS) on the graphics processing unit (GPU) with directive-based methods. - Jian Sun; John M. Dennis; Sheri A. Mickelson; Brian Vanderwende; Andrew Gettelman; Katherine Thayer-Calder (Zenodo, 2022)

Enabling efficient execution of a variational data assimilation application. - John M. Dennis; Allison H. Baker; Brian Dobbins; Michael M. Bell; Jian Sun; Youngsung Kim; Ting-Yu Cha (Int. J. High Perform. Comput. Appl., 2023)

Comparison of causal forest and regression-based approaches to evaluate treatment effect heterogeneity: an application for type 2 diabetes precision medicine. - Ashwini Venkatasubramaniam; Bilal A. Mateen; Beverley M. Shields; Andrew T. Hattersley; Angus G. Jones; Sebastian J. Vollmer; John M. Dennis (BMC Medical Informatics Decis. Mak., 2023)

A Portable and Efficient Lagrangian Particle Capability for Idealized Atmospheric Phenomena. - John M. Dennis; Jian Sun; Sheri Voelz; George Bryan; David Richter 002 (PASC, 2024)

Dirichlet process mixture models to impute missing predictor data in counterfactual prediction models: an application to predict optimal type 2 diabetes therapy. - Pedro Cardoso; John M. Dennis; Jack Bowden; Beverley M. Shields; Trevelyan J. McKinley (BMC Medical Informatics Decis. Mak., 2024)