The Role of Environmental Transmission in Recurrent Avian Influenza Epidemics. - Romulus Breban; John M. Drake; David E. Stallknecht; Pejman Rohani (PLoS Comput. Biol., 2009)

An Agent-Based Model to study the epidemiological and evolutionary dynamics of Influenza viruses. - Benjamin Roche; John M. Drake; Pejman Rohani (BMC Bioinform., 2011)

Decelerating Spread of West Nile Virus by Percolation in a Heterogeneous Urban Landscape. - Krisztian Magori; Waheed I. Bajwa; Sarah Bowden; John M. Drake (PLoS Comput. Biol., 2011)

The global distribution and burden of dengue. - Samir Bhatt; Peter W. Gething; Oliver J. Brady; Jane P. Messina; Andrew W. Farlow; Catherine L. Moyes; John M. Drake; John S. Brownstein; Anne Gatewood Hoen; Osman Sankoh; Monica F. Myers; Dylan B. George; et al. (Nat., 2013)

Improving management of aquatic invasions by integrating shipping network, ecological, and environmental data: data mining for social good. - Jian Xu 019; Thanuka L. Wickramarathne; Nitesh V. Chawla; Erin K. Grey; Karsten Steinhaeuser; Reuben P. Keller; John M. Drake; David M. Lodge (KDD, 2014)

Patterns of Ship-borne Species Spread: A Clustering Approach for Risk Assessment and Management of Non-indigenous Species Spread. - Jian Xu 019; Thanuka L. Wickramarathne; Erin K. Grey; Karsten Steinhaeuser; Reuben P. Keller; John M. Drake; Nitesh V. Chawla; David M. Lodge (CoRR, 2014)

Predicting cryptic links in host-parasite networks. - Tad Dallas; Andrew W. Park; John M. Drake (PLoS Comput. Biol., 2017)

Anticipating epidemic transitions with imperfect data. - Tobias S. Brett; Eamon B. O'Dea; Éric Marty; Paige B. Miller; Andrew W. Park; John M. Drake; Pejman Rohani (PLoS Comput. Biol., 2018)

The statistics of epidemic transitions. - John M. Drake; Tobias S. Brett; Shiyang Chen 008; Bogdan I. Epureanu; Matthew J. Ferrari; Éric Marty; Paige B. Miller; Eamon B. O'Dea; Suzanne M. O'Regan; Andrew W. Park; Pejman Rohani (PLoS Comput. Biol., 2019)

Detecting critical slowing down in high-dimensional epidemiological systems. - Tobias S. Brett; Marco Ajelli; Quan-Hui Liu; Mary G. Krauland; John J. Grefenstette; Willem G. van Panhuis; Alessandro Vespignani; John M. Drake; Pejman Rohani (PLoS Comput. Biol., 2020)

Stability and Resilience of Transportation Systems: Is a Traffic Jam About to Occur? - Amin Ghadami; Charles R. Doering; John M. Drake; Pejman Rohani; Bogdan I. Epureanu (IEEE Trans. Intell. Transp. Syst., 2022)

A data-driven semi-parametric model of SARS-CoV-2 transmission in the United States. - John M. Drake; Andreas Handel; Éric Marty; Eamon B. O'Dea; Tierney O'Sullivan; Giovanni Righi; Andrew T. Tredennick (PLoS Comput. Biol., 2023)

Challenges of COVID-19 Case Forecasting in the US, 2020-2021. - Velma K. Lopez; Estee Y. Cramer; Robert Pagano; John M. Drake; Eamon B. O'Dea; Madeline Adee; Turgay Ayer; Jagpreet Chhatwal; Ozden O. Dalgic; Mary A. Ladd; Benjamin P. Linas; Peter P. Mueller; et al. (PLoS Comput. Biol., 2024)

Physics-informed deep learning for infectious disease forecasting. - Ying Qian; Éric Marty; Avranil Basu; Eamon B. O'Dea; Xianqiao Wang; Spencer Fox; Pejman Rohani; John M. Drake; He Li (CoRR, 2025)