Application of multi-source minimum variance beamformers for reconstruction of correlated neural activity. - Alexander Moiseev; John M. Gaspar; Jennifer A. Schneider; Anthony T. Herdman (NeuroImage, 2011)

FlowClus: efficiently filtering and denoising pyrosequenced amplicons. - John M. Gaspar; W. Kelley Thomas (BMC Bioinform., 2015)

DMRfinder: efficiently identifying differentially methylated regions from MethylC-seq data. - John M. Gaspar; Ronald P. Hart (BMC Bioinform., 2017)

NGmerge: merging paired-end reads via novel empirically-derived models of sequencing errors. - John M. Gaspar (BMC Bioinform., 2018)

Short paired-end reads trump long single-end reads for expression analysis. - Adam H. Freedman; John M. Gaspar; Timothy B. Sackton (BMC Bioinform., 2020)