SIMPLE34: an improved and enhanced implementation for VAX and Sun computers of the SIMPLE algorithm for analysis of clustered repetitive motifs in nucleotide sequences. - John M. Hancock; John S. Armstrong (Comput. Appl. Biosci., 1994)

Detecting cryptically simple protein sequences using the SIMPLE algorithm. - M. Mar Albà; Roman A. Laskowski; John M. Hancock (Bioinform., 2002)

PlantProm: a database of plant promoter sequences. - Ilham A. Shahmuradov; Alex J. Gammerman; John M. Hancock; Peter M. Bramley; Victor V. Solovyev (Nucleic Acids Res., 2003)

Building Mouse Phenotype Ontologies. - Georgios V. Gkoutos; Eain C. J. Green; Ann-Marie Mallon; John M. Hancock; Duncan Davidson (Pacific Symposium on Biocomputing, 2004)

CRAVE: a database, middleware and visualization system for phenotype ontologies. - Georgios V. Gkoutos; Eain C. J. Green; Simon Greenaway; Andrew Blake 003; Ann-Marie Mallon; John M. Hancock (Bioinform., 2005)

EMPReSS: European Mouse Phenotyping Resource for Standardized Screens. - Eain C. J. Green; Georgios V. Gkoutos; Heena V. Lad; Andrew Blake 003; Joseph Weekes; John M. Hancock (Bioinform., 2005)

Digital preservation - financial sustainability of biological data and material resources. - Christina Chandras; Tom Weaver; Michael Zouberakis; John M. Hancock; Paul N. Schofield; Vassilis Aidinis (BIBE, 2008)

CASIMIR: Coordination and Sustainability of International Mouse Informatics Resources. - John M. Hancock; Paul N. Schofield; Christina Chandras; Michael Zouberakis; Vassilis Aidinis; Damian Smedley; Nadia A. Rosenthal; Klaus Schughart (BIBE, 2008)

The Mouse Resource Browser (MRB) - A near-complete registry of mouse resources. - Michael Zouberakis; Christina Chandras; John M. Hancock; Paul N. Schofield; Vassilis Aidinis (BIBE, 2008)

ENFIN - An Integrative Structure for Systems Biology. - Florian Reisinger; Manuel Corpas; John M. Hancock; Henning Hermjakob; Ewan Birney; Pascal Kahlem (DILS, 2008)

Solutions for data integration in functional genomics: a critical assessment and case study. - Damian Smedley; Morris A. Swertz; Katy Wolstencroft; Glenn Proctor; Michael Zouberakis; Jonathan B. L. Bard; John M. Hancock; Paul N. Schofield (Briefings Bioinform., 2008)

EuroPhenome and EMPReSS: online mouse phenotyping resource. - Ann-Marie Mallon; Andrew Blake 003; John M. Hancock (Nucleic Acids Res., 2008)

Models for financial sustainability of biological databases and resources. - Christina Chandras; Thomas Weaver; Michael Zouberakis; Damian Smedley; Klaus Schughart; Nadia A. Rosenthal; John M. Hancock; George Kollias; Paul N. Schofield; Vassilis Aidinis (Database J. Biol. Databases Curation, 2009)

Phylogenetic inference under recombination using Bayesian stochastic topology selection. - Alex Webb; John M. Hancock; Christopher C. Holmes (Bioinform., 2009)

Practical application of ontologies to annotate and analyse large scale raw mouse phenotype data. - Tim Beck; Hugh Morgan; Andrew Blake 003; Sara Wells; John M. Hancock; Ann-Marie Mallon (BMC Bioinform., 2009)

Finding and sharing: new approaches to registries of databases and services for the biomedical sciences. - Damian Smedley; Paul N. Schofield; Chao-Kung Chen; Vassilis Aidinis; Crysanthi Ainali; Jonathan B. L. Bard; Rudi Balling; Ewan Birney; Andrew Blake 003; Erik Bongcam-Rudloff; Anthony J. Brookes; Gianni Cesareni; et al. (Database J. Biol. Databases Curation, 2010)

Mouse Resource Browser - a database of mouse databases. - Michael Zouberakis; Christina Chandras; Morris A. Swertz; Damian Smedley; Michael Gruenberger; Jonathan B. L. Bard; Klaus Schughart; Nadia A. Rosenthal; John M. Hancock; Paul N. Schofield; George Kollias; Vassilis Aidinis (Database J. Biol. Databases Curation, 2010)

MouseBook: an integrated portal of mouse resources. - Andrew Blake 003; Karen Pickford; Simon Greenaway; Steve Thomas; Amanda J. Pickard; Christine M. Williamson; Niels C. Adams; Alison Walling; Tim Beck; Martin Fray; Jo Peters; Tom Weaver; et al. (Nucleic Acids Res., 2010)

EuroPhenome: a repository for high-throughput mouse phenotyping data. - Hugh Morgan; Tim Beck; Andrew Blake 003; Hilary Gates; Niels C. Adams; Guillaume Debouzy; Sophie Leblanc; Christoph Lengger; Holger Maier; David G. Melvin; Hamid Meziane; Dave Richardson; et al. (Nucleic Acids Res., 2010)

The Vertebrate Bridging Ontology (VBO). - Ravensara S. Travillian; James Malone; Chao Pang; John M. Hancock; Peter W. H. Holland; Paul N. Schofield; Helen E. Parkinson (ICBO, 2011)

Towards BioDBcore: a community-defined information specification for biological databases. - Pascale Gaudet; Amos Bairoch; Dawn Field; Susanna-Assunta Sansone; Chris F. Taylor; Teresa K. Attwood; Alex Bateman; Judith A. Blake; Carol J. Bult; J. Michael Cherry; Rex L. Chisholm; Guy Cochrane; et al. (Database J. Biol. Databases Curation, 2011)

Anatomy ontologies and potential users: bridging the gap. - Ravensara S. Travillian; Tomasz Adamusiak; Tony Burdett; Michael Gruenberger; John M. Hancock; Ann-Marie Mallon; James Malone; Paul N. Schofield; Helen E. Parkinson (J. Biomed. Semant., 2011)

NucleoFinder: a statistical approach for the detection of nucleosome positions. - Jérémie Becker; Christopher Yau; John M. Hancock; Christopher C. Holmes (Bioinform., 2013)

BioCIDER: a Contextualisation InDEx for biological Resources discovery. - Carlos Horro; Martin Cook; Teresa K. Attwood; Michelle D. Brazas; John M. Hancock; Patricia M. Palagi; Manuel Corpas; Rafael C. Jiménez (Bioinform., 2017)

Introducing the Brassica Information Portal: Towards integrating genotypic and phenotypic Brassica crop data. - Annemarie H. Eckes; Tomasz Gubala; Piotr Nowakowski; Tomasz Szymczyszyn; Rachel Wells; Judith A. Irwin; Carlos Horro; John M. Hancock; Graham J. King; Sarah C. Dyer; Wiktor Jurkowski (F1000Research, 2017)

Developing a strategy for computational lab skills training through Software and Data Carpentry: Experiences from the ELIXIR Pilot action. - Aleksandra Pawlik; Celia W. G. van Gelder; Aleksandra Nenadic; Patricia M. Palagi; Eija Korpelainen; Philip Lijnzaad; Diana Marek; Susanna-Assunta Sansone; John M. Hancock; Carole A. Goble (F1000Research, 2017)

PIsCO: A Performance indicators framework for collection of bioinformatics resource metrics. - Haydee Artaza; John M. Hancock; Rafael C. Jiménez; Manuel Corpas (PeerJ Prepr., 2017)

Community curation of bioinformatics software and data resources. - Jon C. Ison; Hervé Ménager; Bryan Brancotte; Erik Jaaniso; Ahto Salumets; Tomás Racek; Anna-Lena Lamprecht; Magnus Palmblad; Matús Kalas; Piotr Chmura; John M. Hancock; Veit Schwämmle; et al. (Briefings Bioinform., 2020)

Disentangling the complexity of low complexity proteins. - Pablo Mier; Lisanna Paladin; Stella Tamana; Sophia Petrosian; Borbála Hajdu-Soltész; Annika Urbanek; Aleksandra Gruca; Dariusz Plewczynski; Marcin Grynberg; Pau Bernadó; Zoltán Gáspári; Christos A. Ouzounis; et al. (Briefings Bioinform., 2020)

The ELIXIR Human Copy Number Variations Community: building bioinformatics infrastructure for research. - David Salgado; Irina M. Armean; Michael Baudis; Sergi Beltran; Salvador Capella-Gutiérrez; Denise Carvalho-Silva; Victoria Dominguez Del Angel; Joaquín Dopazo; Laura I. Furlong; Bo Gao; Leyla Jael García Castro; Dietlind Gerloff; et al. (F1000Research, 2020)

PlaToLoCo: the first web meta-server for visualization and annotation of low complexity regions in proteins. - Patryk Jarnot; Joanna Ziemska-Legiecka; Laszlo Dobson; Matthew Merski; Pablo Mier; Miguel A. Andrade-Navarro; John M. Hancock; Zsuzsanna Dosztányi; Lisanna Paladin; Marco Necci; Damiano Piovesan; Silvio C. E. Tosatto; et al. (Nucleic Acids Res., 2020)

Making PBPK models more reproducible in practice. - Elena Domínguez Romero; Stanislav Mazurenko; Martin Scheringer; Vítor A. P. Martins dos Santos; Chris T. A. Evelo; Mihail Anton; John M. Hancock; Anze Zupanic; María Suárez-Diez (Briefings Bioinform., 2024)

Response to Letter to Editor by A. Derbalah et al.: the role of automation in enhancing reproducibility and interoperability of PBPK models. - Elena Domínguez Romero; Stanislav Mazurenko; Martin Scheringer; Vítor A. P. Martins dos Santos; Chris T. A. Evelo; Mihail Anton; John M. Hancock; Anze Zupanic; María Suárez-Diez (Briefings Bioinform., 2024)

Open and Sustainable AI: challenges, opportunities and the road ahead in the life sciences. - Gavin Farrell; Eleni Adamidi; Rafael Andrade Buono; Mihail Anton; Omar Abdelghani Attafi; Salvador Capella-Gutiérrez; Emidio Capriotti; Leyla Jael Castro; Davide Cirillo; Lisa C. Crossman; Christophe Dessimoz; Alexandros C. Dimopoulos; et al. (CoRR, 2025)