Squares in Binary Partial Words. - Francine Blanchet-Sadri; Yang Jiao; John M. Machacek (Developments in Language Theory, 2012)

An Interior Point Method for Solving Semidefinite Programs Using Cutting Planes and Weighted Analytic Centers. - John M. Machacek; Shafiu Jibrin (J. Appl. Math., 2012)

Squares in partial words. - Francine Blanchet-Sadri; Yang Jiao; John M. Machacek; J. D. Quigley; Xufan Zhang (Theor. Comput. Sci., 2014)

Combinatorial Hopf Algebras of Simplicial Complexes. - Carolina Benedetti; Joshua Hallam; John M. Machacek (SIAM J. Discret. Math., 2016)

Plurigraph Coloring and Scheduling Problems. - John M. Machacek (Electron. J. Comb., 2017)

Deleting Powers in Words. - John M. Machacek (J. Autom. Lang. Comb., 2017)

Boundary measurement matrices for directed networks on surfaces. - John M. Machacek (Adv. Appl. Math., 2018)

Egyptian Fractions and Prime Power Divisors. - John M. Machacek (J. Integer Seq., 2018)

Partial words with a unique position starting a square. - John M. Machacek (Inf. Process. Lett., 2019)

New invariants for permutations, orders and graphs. - Jean-Christophe Aval; Nantel Bergeron; John M. Machacek (Adv. Appl. Math., 2020)

Building maximal green sequences via component preserving mutations. - Eric Bucher; John M. Machacek; Evan Runburg; Abe Yeck; Ethan Zwede (Ars Math. Contemp., 2020)

Sign Variation and Descents. - Nantel Bergeron; Aram Dermenjian; John M. Machacek (Electron. J. Comb., 2020)

Unique maximum independent sets in graphs on monomials of a fixed degree. - John M. Machacek (LAGOS, 2021)

Mechanical Proving with Walnut for Squares and Cubes in Partial Words. - John M. Machacek (CPM, 2022)

Shelling the (m=1 ) amplituhedron. - Steven N. Karp; John M. Machacek (Comb. Theory, 2023)

Graph-like Scheduling Problems and Property B. - John M. Machacek (CoRR, 2023)

q-Rational and q-real binomial coefficients. - John M. Machacek; Nicholas Ovenhouse (Adv. Appl. Math., 2024)

Gorenstein Braid Cones and Crepant Resolutions. - Joshua Hallam; John M. Machacek (Discret. Comput. Geom., 2024)

Discrete Dynamical Systems From Real Valued Mutation. - John M. Machacek; Nicholas Ovenhouse (Exp. Math., 2024)