The Real-Time Interactive 3D-DVA for Robust Coronary MRA. - Todd S. Sachs; Craig H. Meyer; John M. Pauly; Bob S. Hu; Dwight G. Nishimura; Albert Macovski (IEEE Trans. Medical Imaging, 2000)

Learned regulation of spatially localized brain activation using real-time fMRI. - R. Christopher DeCharms; Kalina Christoff; Gary H. Glover; John M. Pauly; Susan Whitfield; John D. E. Gabrieli (NeuroImage, 2004)

Rapid gridding reconstruction with a minimal oversampling ratio. - Philip J. Beatty; Dwight G. Nishimura; John M. Pauly (IEEE Trans. Medical Imaging, 2005)

T2-Selective Magnetization Preparation Pulses. - L. Vidarsson; Charles H. Cunningham; G. E. Gold; John M. Pauly (IEEE Trans. Medical Imaging, 2007)

Compressed Sensing MRI. - Michael Lustig; David L. Donoho; Juan M. Santos; John M. Pauly (IEEE Signal Process. Mag., 2008)

A Fast Method for Designing Time-Optimal Gradient Waveforms for Arbitrary k-Space Trajectories. - Michael Lustig; Seung-Jean Kim; John M. Pauly (IEEE Trans. Medical Imaging, 2008)

Noise Performance of a Precision Pulsed Electromagnet Power Supply for Magnetic Resonance Imaging. - Nathaniel I. Matter; Blaine Chronik; John M. Pauly; Albert Macovski; Steven M. Conolly; Greig C. Scott (IEEE Trans. Medical Imaging, 2008)

Regularized Referenceless Temperature Estimation in PRF-Shift MR Thermometry. - William Grissom; Kim Butts-Pauly; Michael Lustig; Viola Rieke; John M. Pauly; Nathan McDannold (ISBI, 2009)

Improved Time Series Reconstruction for Dynamic Magnetic Resonance Imaging. - Uygar Sümbül; Juan M. Santos; John M. Pauly (IEEE Trans. Medical Imaging, 2009)

A Practical Acceleration Algorithm for Real-Time Imaging. - Uygar Sümbül; Juan M. Santos; John M. Pauly (IEEE Trans. Medical Imaging, 2009)

Variable-Density Parallel Imaging With Partially Localized Coil Sensitivities. - Tolga Çukur; Juan M. Santos; John M. Pauly; Dwight G. Nishimura (IEEE Trans. Medical Imaging, 2010)

An Optically Coupled System for Quantitative Monitoring of MRI-Induced RF Currents Into Long Conductors. - Marta G. Zanchi; Ross Venook; John M. Pauly; Greig C. Scott (IEEE Trans. Medical Imaging, 2010)

Practical parallel imaging compressed sensing MRI: Summary of two years of experience in accelerating body MRI of pediatric patients. - Shreyas Vasanawala; M. J. Murphy; Marcus T. Alley; P. Lai; Kurt Keutzer; John M. Pauly; Michael Lustig (ISBI, 2011)

Bound pool fractions complement diffusion measures to describe white matter micro and macrostructure. - Nikola Stikov; Lee M. Perry; Aviv A. Mezer; Elena I. Rykhlevskaia; Brian A. Wandell; John M. Pauly; Robert F. Dougherty (NeuroImage, 2011)

Frequency-Offset Cartesian Feedback for MRI Power Amplifier Linearization. - Marta G. Zanchi; Pascal P. Stang; Adam B. Kerr; John M. Pauly; Greig C. Scott (IEEE Trans. Medical Imaging, 2011)

Analysis of the BOLD characteristics in pass-band bSSFP fMRI. - Taek-Soo Kim; Jongho Lee 003; Jin Hyung Lee; Gary H. Glover; John M. Pauly (Int. J. Imaging Syst. Technol., 2012)

Generating Super Stimulated-Echoes in MRI and Their Application to Hyperpolarized C-13 Diffusion Metabolic Imaging. - Peder E. Z. Larson; Adam B. Kerr; Galen Reed; Ralph E. Hurd; John Kurhanewicz; John M. Pauly; Daniel B. Vigneron (IEEE Trans. Medical Imaging, 2012)

RF Field Visualization of RF Ablation at the Larmor Frequency. - Kim Shultz; Pascal P. Stang; Adam B. Kerr; John M. Pauly; Greig C. Scott (IEEE Trans. Medical Imaging, 2012)

Medusa: A Scalable MR Console Using USB. - Pascal P. Stang; Steven M. Conolly; Juan M. Santos; John M. Pauly; Greig C. Scott (IEEE Trans. Medical Imaging, 2012)

Automated, Depth-Resolved Estimation of the Attenuation Coefficient From Optical Coherence Tomography Data. - Gennifer T. Smith; Nicholas Dwork; Daniel O'Connor; Uzair Sikora; Kristen L. Lurie; John M. Pauly; Audrey K. Ellerbee (IEEE Trans. Medical Imaging, 2015)

Depletion-Mode GaN HEMT Q-Spoil Switches for MRI Coils. - Jonathan Y. Lu; Thomas Grafendorfer; Tao Zhang; Shreyas Vasanawala; Fraser Robb; John M. Pauly; Greig C. Scott (IEEE Trans. Medical Imaging, 2016)

Hybrid-Space SENSE Reconstruction for Simultaneous Multi-Slice MRI. - Kangrong Zhu; Robert F. Dougherty; Hua Wu; Matthew J. Middione; Atsushi M. Takahashi; Tao Zhang; John M. Pauly; Adam B. Kerr (IEEE Trans. Medical Imaging, 2016)

Recurrent generative adversarial neural networks for compressive imaging. - Morteza Mardani; Enhao Gong; Joseph Y. Cheng; John M. Pauly; Lei Xing 001 (CAMSAP, 2017)

Deep Generative Adversarial Networks for Compressed Sensing Automates MRI. - Morteza Mardani; Enhao Gong; Joseph Y. Cheng; Shreyas Vasanawala; Greg Zaharchuk; Marcus T. Alley; Neil Thakur; Song Han 003; William J. Dally; John M. Pauly; Lei Xing 001 (CoRR, 2017)

Recurrent Generative Adversarial Networks for Proximal Learning and Automated Compressive Image Recovery. - Morteza Mardani; Hatef Monajemi; Vardan Papyan; Shreyas Vasanawala; David L. Donoho; John M. Pauly (CoRR, 2017)

200x Low-dose PET Reconstruction using Deep Learning. - Junshen Xu; Enhao Gong; John M. Pauly; Greg Zaharchuk (CoRR, 2017)

A Millimeter-Wave Digital Link for Wireless MRI. - Kamal Aggarwal; Kiran Raj Joshi; Yashar Rajavi; Mazhareddin Taghivand; John M. Pauly; Ada S. Y. Poon; Greig C. Scott (IEEE Trans. Medical Imaging, 2017)

Body Diffusion Weighted Imaging Using Non-CPMG Fast Spin Echo. - Eric K. Gibbons; Patrick Le Roux; Shreyas S. Vasanawala; John M. Pauly; Adam B. Kerr (IEEE Trans. Medical Imaging, 2017)

Neural Proximal Gradient Descent for Compressive Imaging. - Morteza Mardani; Qingyun Sun; David L. Donoho; Vardan Papyan; Hatef Monajemi; Shreyas Vasanawala; John M. Pauly (NeurIPS, 2018)

Highly Scalable Image Reconstruction using Deep Neural Networks with Bandpass Filtering. - Joseph Y. Cheng; Feiyu Chen 004; Marcus T. Alley; John M. Pauly; Shreyas S. Vasanawala (CoRR, 2018)

Deep Learning with Attention to Predict Gestational Age of the Fetal Brain. - Liyue Shen; Katie S. Shpanskaya; Edward H. Lee; Emily McKenna; Maryam Maleki; Quin Lu; Safwan Halabi; John M. Pauly; Kristen W. Yeom (CoRR, 2018)

Quantitative susceptibility mapping using deep neural network: QSMnet. - Jaeyeon Yoon; Enhao Gong; Itthi Chatnuntawech; Berkin Bilgic; Jin-Gu Lee; Woojin Jung; Jingyu Ko; Hosan Jung; Kawin Setsompop; Greg Zaharchuk; Eung-Yeop Kim; John M. Pauly; et al. (NeuroImage, 2018)

Thermo-Acoustic Ultrasound for Detection of RF-Induced Device Lead Heating in MRI. - Neerav Dixit; Pascal P. Stang; John M. Pauly; Greig C. Scott (IEEE Trans. Medical Imaging, 2018)

Robust Self-Calibrating nCPMG Acquisition: Application to Body Diffusion-Weighted Imaging. - Eric K. Gibbons; Patrick Le Roux; Shreyas S. Vasanawala; John M. Pauly; Adam B. Kerr (IEEE Trans. Medical Imaging, 2018)

Task-GAN: Improving Generative Adversarial Network for Image Reconstruction. - Jiahong Ouyang; Guanhua Wang; Enhao Gong; Kevin Chen; John M. Pauly; Greg Zaharchuk (MLMIR@MICCAI, 2019)

Accelerated MRI Reconstruction with Dual-Domain Generative Adversarial Network. - Guanhua Wang; Enhao Gong; Suchandrima Banerjee; John M. Pauly; Greg Zaharchuk (MLMIR@MICCAI, 2019)

VAE-GANs for Probabilistic Compressive Image Recovery: Uncertainty Analysis. - Vineet Edupuganti; Morteza Mardani; Joseph Y. Cheng; Shreyas Vasanawala; John M. Pauly (CoRR, 2019)

Compressed Sensing: From Research to Clinical Practice with Data-Driven Learning. - Joseph Y. Cheng; Feiyu Chen 004; Christopher M. Sandino; Morteza Mardani; John M. Pauly; Shreyas S. Vasanawala (CoRR, 2019)

Degrees of Freedom Analysis of Unrolled Neural Networks. - Morteza Mardani; Qingyun Sun; Vardan Papyan; Shreyas Vasanawala; John M. Pauly; David L. Donoho (CoRR, 2019)

Automatically Determining the Confocal Parameters From OCT B-Scans for Quantification of the Attenuation Coefficients. - Nicholas Dwork; Gennifer T. Smith; Theodore Leng; John M. Pauly; Audrey K. Bowden (IEEE Trans. Medical Imaging, 2019)

Deep Generative Adversarial Neural Networks for Compressive Sensing MRI. - Morteza Mardani; Enhao Gong; Joseph Y. Cheng; Shreyas S. Vasanawala; Greg Zaharchuk; Lei Xing 001; John M. Pauly (IEEE Trans. Medical Imaging, 2019)

Diagnostic Image Quality Assessment and Classification in Medical Imaging: Opportunities and Challenges. - Jeffrey J. Ma; Ukash Nakarmi; Cedric Yue Sik Kin; Christopher M. Sandino; Joseph Y. Cheng; Ali B. Syed; Peter Wei; John M. Pauly; Shreyas S. Vasanawala (ISBI, 2020)

Multi-scale Unrolled Deep Learning Framework for Accelerated Magnetic Resonance Imaging. - Ukash Nakarmi; Joseph Y. Cheng; Edgar P. Rios; Morteza Mardani; John M. Pauly; Leslie Ying; Shreyas S. Vasanawala (ISBI, 2020)

Deep learning and multi-contrast-based denoising for low-SNR Arterial Spin Labeling (ASL) MRI. - Enhao Gong; Jia Guo; Jiang Liu 014; Audrey P. Fan; John M. Pauly; Greg Zaharchuk (Image Processing, 2020)

Ultra-low-dose 18F-FDG brain PET/MR denoising using deep learning and multi-contrast information. - Junshen Xu; Enhao Gong; Jiahong Ouyang; John M. Pauly; Greg Zaharchuk (Image Processing, 2020)

Complex-Valued Convolutional Neural Networks for MRI Reconstruction. - Elizabeth K. Cole; Joseph Y. Cheng; John M. Pauly; Shreyas S. Vasanawala (CoRR, 2020)

Unsupervised MRI Reconstruction with Generative Adversarial Networks. - Elizabeth K. Cole; John M. Pauly; Shreyas S. Vasanawala; Frank Ong (CoRR, 2020)

Compressed Sensing: From Research to Clinical Practice With Deep Neural Networks: Shortening Scan Times for Magnetic Resonance Imaging. - Christopher M. Sandino; Joseph Y. Cheng; Feiyu Chen 004; Morteza Mardani; John M. Pauly; Shreyas S. Vasanawala (IEEE Signal Process. Mag., 2020)

Synthesize High-Quality Multi-Contrast Magnetic Resonance Imaging From Multi-Echo Acquisition Using Multi-Task Deep Generative Model. - Guanhua Wang; Enhao Gong; Suchandrima Banerjee; Dann Martin; Elizabeth Tong; Jay Choi; Huijun Chen; Max Wintermark; John M. Pauly; Greg Zaharchuk (IEEE Trans. Medical Imaging, 2020)

Fast Unsupervised MRI Reconstruction Without Fully-Sampled Ground Truth Data Using Generative Adversarial Networks. - Elizabeth K. Cole; Frank Ong; Shreyas S. Vasanawala; John M. Pauly (ICCVW, 2021)

Vector-output ReLU Neural Network Problems are Copositive Programs: Convex Analysis of Two Layer Networks and Polynomial-time Algorithms. - Arda Sahiner; Tolga Ergen; John M. Pauly; Mert Pilanci (ICLR, 2021)

Convex Regularization behind Neural Reconstruction. - Arda Sahiner; Morteza Mardani; Batu Ozturkler; Mert Pilanci; John M. Pauly (ICLR, 2021)

Noise2Recon: A Semi-Supervised Framework for Joint MRI Reconstruction and Denoising. - Arjun D. Desai; Batu M. Ozturkler; Christopher M. Sandino; Shreyas Vasanawala; Brian A. Hargreaves; Christopher Ré; John M. Pauly; Akshay S. Chaudhari (CoRR, 2021)

Artifact- and content-specific quality assessment for MRI with image rulers. - Ke Lei; John M. Pauly; Shreyas S. Vasanawala (CoRR, 2021)

Utilizing the wavelet transform's structure in compressed sensing. - Nicholas Dwork; Daniel O'Connor; Corey A. Baron; Ethan M. I. Johnson; Adam B. Kerr; John M. Pauly; Peder E. Z. Larson (Signal Image Video Process., 2021)

Uncertainty Quantification in Deep MRI Reconstruction. - Vineet Edupuganti; Morteza Mardani; Shreyas Vasanawala; John M. Pauly (IEEE Trans. Medical Imaging, 2021)

Wasserstein GANs for MR Imaging: From Paired to Unpaired Training. - Ke Lei; Morteza Mardani; John M. Pauly; Shreyas S. Vasanawala (IEEE Trans. Medical Imaging, 2021)

Multi-Domain Image Completion for Random Missing Input Data. - Liyue Shen; Wentao Zhu 001; Xiaosong Wang 001; Lei Xing 001; John M. Pauly; Baris Turkbey; Stephanie Anne Harmon; Thomas Hogue Sanford; Sherif Mehralivand; Peter L. Choyke; Bradford J. Wood; Daguang Xu (IEEE Trans. Medical Imaging, 2021)

Learned Compression of High Dimensional Image Datasets. - Elizabeth K. Cole; Qingxi Meng; John M. Pauly; Shreyas Vasanawala (CVPR Workshops, 2022)

Demystifying Batch Normalization in ReLU Networks: Equivalent Convex Optimization Models and Implicit Regularization. - Tolga Ergen; Arda Sahiner; Batu Ozturkler; John M. Pauly; Morteza Mardani; Mert Pilanci (ICLR, 2022)

Hidden Convexity of Wasserstein GANs: Interpretable Generative Models with Closed-Form Solutions. - Arda Sahiner; Tolga Ergen; Batu Ozturkler; Burak Bartan; John M. Pauly; Morteza Mardani; Mert Pilanci (ICLR, 2022)

Unraveling Attention via Convex Duality: Analysis and Interpretations of Vision Transformers. - Arda Sahiner; Tolga Ergen; Batu Ozturkler; John M. Pauly; Morteza Mardani; Mert Pilanci (ICML, 2022)

Scale-Equivariant Unrolled Neural Networks for Data-Efficient Accelerated MRI Reconstruction. - Beliz Gunel; Arda Sahiner; Arjun D. Desai; Akshay S. Chaudhari; Shreyas Vasanawala; Mert Pilanci; John M. Pauly (MICCAI (6), 2022)

VORTEX: Physics-Driven Data Augmentations Using Consistency Training for Robust Accelerated MRI Reconstruction. - Arjun D. Desai; Beliz Gunel; Batu M. Ozturkler; Harris Beg; Shreyas Vasanawala; Brian A. Hargreaves; Christopher Ré; John M. Pauly; Akshay S. Chaudhari (MIDL, 2022)

A geometry-informed deep learning framework for ultra-sparse 3D tomographic image reconstruction. - Liyue Shen; Wei Zhao 029; Dante Capaldi; John M. Pauly; Lei Xing 001 (Comput. Biol. Medicine, 2022)

GLEAM: Greedy Learning for Large-Scale Accelerated MRI Reconstruction. - Batu Ozturkler; Arda Sahiner; Tolga Ergen; Arjun D. Desai; Christopher M. Sandino; Shreyas Vasanawala; John M. Pauly; Morteza Mardani; Mert Pilanci (CoRR, 2022)

Scale-Agnostic Super-Resolution in MRI using Feature-Based Coordinate Networks. - Dave Van Veen; Rogier van der Sluijs; Batu Ozturkler; Arjun D. Desai; Christian Bluethgen; Robert D. Boutin; Marc H. Willis; Gordon Wetzstein; David B. Lindell; Shreyas Vasanawala; John M. Pauly; Akshay S. Chaudhari (CoRR, 2022)

Automated MRI Field of View Prescription from Region of Interest Prediction by Intra-stack Attention Neural Network. - Ke Lei; Ali B. Syed; Xucheng Zhu; John M. Pauly; Shreyas S. Vasanawala (CoRR, 2022)

Artifact- and content-specific quality assessment for MRI with image rulers. - Ke Lei; Ali B. Syed; Xucheng Zhu; John M. Pauly; Shreyas S. Vasanawala (Medical Image Anal., 2022)

Novel-view X-ray projection synthesis through geometry-integrated deep learning. - Liyue Shen; Lequan Yu; Wei Zhao 029; John M. Pauly; Lei Xing 001 (Medical Image Anal., 2022)

A Semi-Blind Calibration and Compensation Method for Dynamic Range Recovery of Low-Power Pre-Amplifiers in MRI Receive Chains. - Christopher Vassos; Fraser Robb; Shreyas Vasanawala; John M. Pauly; Greig C. Scott (IEEE Trans. Medical Imaging, 2022)

RadAdapt: Radiology Report Summarization via Lightweight Domain Adaptation of Large Language Models. - Dave Van Veen; Cara Van Uden; Maayane Attias; Anuj Pareek; Christian Bluethgen; Malgorzata Polacin; Wah Chiu; Jean-Benoit Delbrouck; Juan Manuel Zambrano Chaves; Curtis P. Langlotz; Akshay Chaudhari; John M. Pauly (BioNLP@ACL, 2023)

Clinical Text Summarization: Adapting Large Language Models Can Outperform Human Experts. - Dave Van Veen; Cara Van Uden; Louis Blankemeier; Jean-Benoit Delbrouck; Asad Aali; Christian Bluethgen; Anuj Pareek; Malgorzata Polacin; William Collins; Neera Ahuja; Curtis P. Langlotz; Jason Hom; et al. (CoRR, 2023)

SLfRank: Shinnar-Le-Roux Pulse Design With Reduced Energy and Accurate Phase Profiles Using Rank Factorization. - Frank Ong; Zheng Zhong; Congyu Liao; Michael Lustig; Shreyas S. Vasanawala; John M. Pauly (IEEE Trans. Medical Imaging, 2023)

Scaling Convex Neural Networks with Burer-Monteiro Factorization. - Arda Sahiner; Tolga Ergen; Batu Ozturkler; John M. Pauly; Morteza Mardani; Mert Pilanci (ICLR, 2024)

NeRP: Implicit Neural Representation Learning With Prior Embedding for Sparsely Sampled Image Reconstruction. - Liyue Shen; John M. Pauly; Lei Xing 001 (IEEE Trans. Neural Networks Learn. Syst., 2024)

Joint Optimization of Sampling Pattern and Reconstruction for Dynamic MRI. - Cagan Alkan; Julio Oscanoa; Xucheng Zhu; Ali B. Syed; Shreyas Vasanawala; John M. Pauly (ISBI, 2025)

MRI Retrospective Respiratory Gating and Cardiac Sensing by CW Doppler Radar: A Feasibility Study. - Wonje Lee; Kanghyun Ryu; Zhitao Li 004; Julio Oscanoa; Yuxin Wu; Fraser Robb; Shreyas Vasanawala; John M. Pauly; Greig C. Scott (IEEE Trans. Biomed. Eng., 2025)

AutoSamp: Autoencoding k-Space Sampling via Variational Information Maximization for 3D MRI. - Cagan Alkan; Morteza Mardani; Congyu Liao; Zhitao Li 004; Shreyas S. Vasanawala; John M. Pauly (IEEE Trans. Medical Imaging, 2025)

OPTIKS: Optimized Gradient Properties Through Timing in K-Space. - Matthew A. McCready; Xiaozhi Cao; Kawin Setsompop; John M. Pauly; Adam B. Kerr (CoRR, 2025)