Induction of Rules for Biological Macromolecular Crystallization. - Daniel N. Hennessy; Vanathi Gopalakrishnan; Bruce G. Buchanan; John M. Rosenberg; Devika Subramanian (ISMB, 1994)

Multidimensional Free-Energy Calculations Using the Weighted Histogram Analysis Method. - Shankar Kumar; John M. Rosenberg; Djamal Bouzida; Robert H. Swendsen; Peter A. Kollman (J. Comput. Chem., 1995)

Intelligent Aids for Parallel Experiment Planning and Macromolecular Crystallization. - Vanathi Gopalakrishnan; Bruce G. Buchanan; John M. Rosenberg (ISMB, 2000)

Closing the Loop: An Agenda- and Justification-Based Framework for Selecting the Next Discovery Task to Perform. - Gary Livingston; John M. Rosenberg; Bruce G. Buchanan (ICDM, 2001)

Closing the Loop: Heuristics for Autonomous Discovery. - Gary Livingston; John M. Rosenberg; Bruce G. Buchanan (ICDM, 2001)

Bayesian Case Reconstruction. - Daniel N. Hennessy; Bruce G. Buchanan; John M. Rosenberg (ECCBR, 2002)

XtalGrow: Probabilistic Screen Design for Protein Crystallography. - Daniel N. Hennessy; Bruce G. Buchanan; John M. Rosenberg (METMBS, 2003)

An Agenda- and Justification-Based Framework for Discovery Systems. - Gary Livingston; John M. Rosenberg; Bruce G. Buchanan (Knowl. Inf. Syst., 2003)

The adaptive integration method for calculating general free energy functions. - Robert H. Swendsen; Marc Fasnacht; John M. Rosenberg (Comput. Phys. Commun., 2005)

A kinetic mechanism for enhanced selectivity of membrane transport. - Paola Bisignano; Michael A. Lee; August George; Daniel M. Zuckerman; Michael Grabe; John M. Rosenberg (PLoS Comput. Biol., 2020)

A systems-biology approach to molecular machines: Exploration of alternative transporter mechanisms. - August George; Paola Bisignano; John M. Rosenberg; Michael Grabe; Daniel M. Zuckerman (PLoS Comput. Biol., 2020)

Taking the Monte-Carlo gamble: How not to buckle under the pressure! - Yessica Gómez; Andrew M. Natale; James Lincoff; Charles W. Wolgemuth; John M. Rosenberg; Michael Grabe (J. Comput. Chem., 2022)