Correlation analysis reveals the emergence of coherence in the gene expression dynamics following system perturbation. - Nicola Neretti; Daniel Remondini; Marc Tatar; John M. Sedivy; Michela Pierini; Dawn Mazzatti; Jonathan Powell; Claudio Franceschi; Gastone C. Castellani (BMC Bioinform., 2007)

Networks from Gene Expression Time Series: Characterization of Correlation Patterns. - Daniel Remondini; Nicola Neretti; Claudio Franceschi; Paolo Tieri; John M. Sedivy; Luciano Milanesi; Gastone C. Castellani (Int. J. Bifurc. Chaos, 2007)

Reconstructing networks of pathways via significance analysis of their intersections. - Mirko Francesconi; Daniel Remondini; Nicola Neretti; John M. Sedivy; Leon N. Cooper; Ettore Verondini; Luciano Milanesi; Gastone C. Castellani (BMC Bioinform., 2008)