SAMFA: Simplifying Molecular Description for 3D-QSAR. - John Manchester; Ryszard Czerminski (J. Chem. Inf. Model., 2008)

CAUTION: Popular "Benchmark" Data Sets Do Not Distinguish the Merits of 3D QSAR Methods. - John Manchester; Ryszard Czerminski (J. Chem. Inf. Model., 2009)

Evaluation of pKa Estimation Methods on 211 Druglike Compounds. - John Manchester; Grant Walkup; Olga Rivin; Zhiping You (J. Chem. Inf. Model., 2010)

PathwayMap: Molecular Pathway Association with Self-Normalizing Neural Networks. - José Jiménez; Davide Sabbadin; Alberto Cuzzolin; Gerard Martínez-Rosell; Jacob Gora; John Manchester; José S. Duca; Gianni De Fabritiis (J. Chem. Inf. Model., 2019)