A Comparison of Implicitly Parallel Multithreaded and Data-Parallel Implementations of an Ocean Model. - Andrew Shaw; Arvind 001; Kyoo-Chan Cho; Christopher Hill; R. Paul Johnson; John Marshall (J. Parallel Distributed Comput., 1998)

Remote sensing and modeling of wildfires. - Michelle A. Kuester; John Marshall; William J. Emery (IGARSS, 2005)

Planet-in-a-Bottle: A Numerical Fluid-Laboratory System. - Chris Hill; Bradley C. Kuszmaul; Charles E. Leiserson; John Marshall (International Conference on Computational Science (1), 2007)

A Realtime Observatory for Laboratory Simulation of Planetary Circulation. - Sai Ravela; John Marshall; Christopher Hill; Andrew Wong; Scott Stransky (International Conference on Computational Science (1), 2007)

Tracking rotating fluids in realtime using snapshots. - Sai Ravela; John Marshall; Christopher Hill; Andrew Wong; Scott Stransky (CVPR, 2008)

BioLogic: a natural history of digital life. - Suzanne Anker; Cézanne Charles; John Marshall; Sascha Pohflepp; Sabrina Raaf; Marcia Tanner (SIGGRAPH Art Gallery, 2009)

Image registration and a metric to assess the transformation function. - John Marshall; Peter Doucette (AIPR, 2011)

Patterns of life visual analytics suite for analyzing GPS movement patterns. - Simon Attfield; Peter J. Passmore; Neesha Kodagoda; Pragya Paudyal; David Neilson; George Pagiatakis; Brian Joyce; Robert Wells; B. L. William Wong; Adrian Wagstaff; James Bullock; Adam Malin; et al. (IEEE VAST, 2014)

POLAR-An Interactive Patterns of Life Visualisation Tool for Intelligence Analysis. - Neesha Kodagoda; Simon Attfield; Phong Hai Nguyen; Leishi Zhang; Kai Xu 003; B. L. William Wong; Adrian Wagstaff; Graham Phillips; James Bullock; John Marshall; Stewart Bertram (JISIC, 2014)

OpenCL-based erasure coding on heterogeneous architectures. - Guoyang Chen; Huiyang Zhou; Xipeng Shen; Joshua Gahm; Narayan Venkat; Skip Booth; John Marshall (ASAP, 2016)

The Case for a Flexible Low-Level Backend for Software Data Planes. - Sean Choi; Xiang Long; Muhammad Shahbaz 001; Skip Booth; Andy Keep; John Marshall; Changhoon Kim (APNet, 2017)

OpenCL-based design pattern for line rate packet processing. - Jehandad Khan; Peter Athanas; Skip Booth; John Marshall (ASAP, 2017)

Developing Dynamic Profiling and Debugging Support in OpenCL for FPGAs. - Anshuman Verma; Huiyang Zhou; Skip Booth; Robbie King; James Coole; Andy Keep; John Marshall; Wu-chun Feng (DAC, 2017)

Use of Cuckoo Filters with FD.io VPP for Software IPv6 Routing Lookup. - Minseok Kwon; Shailesh Vajpayee; Pragash Vijayaragavan; Arjun Dhuliya; John Marshall (SIGCOMM Posters and Demos, 2017)

PVPP: A Programmable Vector Packet Processor. - Sean Choi; Xiang Long; Muhammad Shahbaz 001; Skip Booth; Andy Keep; John Marshall; Changhoon Kim (SOSR, 2017)

htsget: a protocol for securely streaming genomic data. - Jerome Kelleher; Mike Lin; Carl H. Albach; Ewan Birney; Robert Davies; Marina Gourtovaia; David Glazer; Cristina Y. González; David K. Jackson; Aaron Kemp; John Marshall; Andrew Nowak; et al. (Bioinform., 2019)

CuVPP: Filter-based Longest Prefix Matching in Software Data Planes. - Minseok Kwon; Krishna Prasad Neupane; John Marshall; M. Mustafa Rafique (CLUSTER, 2020)

Oceananigans.jl: Fast and friendly geophysical fluid dynamics on GPUs. - Ali Ramadhan; Gregory LeClaire Wagner; Chris Hill; Jean-Michel Campin; Valentin Churavy; Tim Besard; Andre Souza; Alan Edelman; Raffaele Ferrari; John Marshall (J. Open Source Softw., 2020)

Crypt4GH: a file format standard enabling native access to encrypted data. - Alexander Senf; Robert Davies; Frédéric Haziza; John Marshall; Juan Ramón Troncoso-Pastoriza; Oliver Hofmann 001; Thomas M. Keane (Bioinform., 2021)

Analyzing the impact of a real-life outbreak simulator on pandemic mitigation: An epidemiological modeling study. - Ivan Specht; Kian Sani; Bryn C. Loftness; Curtis S. Hoffmann; Gabrielle Gionet; Amy Bronson; John Marshall; Craig Decker; Landen Bailey; Tomi Siyanbade; Molly Kemball; Brett E. Pickett; et al. (Patterns, 2022)

Privacy Aware Question-Answering System for Online Mental Health Risk Assessment. - Prateek Chhikara; Ujjwal Pasupulety; John Marshall; Dhiraj Chaurasia; Shweta Kumari (BioNLP@ACL, 2023)

Oceananigans.jl: A model that achieves breakthrough resolution, memory and energy efficiency in global ocean simulations. - Simone Silvestri; Gregory LeClaire Wagner; Christopher Hill; Matin Raayai Ardakani; Johannes P. Blaschke; Jean-Michel Campin; Valentin Churavy; Navid C. Constantinou; Alan Edelman; John Marshall; Ali Ramadhan; Andre Souza; et al. (CoRR, 2023)

Are Doppler Velocity Measurements Useful for Spinning Radar Odometry? - Daniil Lisus; Keenan Burnett; David J. Yoon; Richard Poulton; John Marshall; Timothy D. Barfoot (IEEE Robotics Autom. Lett., 2025)