forqs: forward-in-time simulation of recombination, quantitative traits and selection. - Darren Kessner; John Novembre (Bioinform., 2014)

Fast spatial ancestry via flexible allele frequency surfaces. - John Michael Rañola; John Novembre; Kenneth Lange (Bioinform., 2014)

Fast and accurate site frequency spectrum estimation from low coverage sequence data. - Eunjung Han; Janet S. Sinsheimer; John Novembre (Bioinform., 2015)

Visualizing the geography of genetic variants. - Joseph H. Marcus; John Novembre (Bioinform., 2017)

Using pseudoalignment and base quality to accurately quantify microbial community composition. - Mark Reppell; John Novembre (PLoS Comput. Biol., 2018)

Inference and visualization of DNA damage patterns using a grade of membership model. - Hussein Al-Asadi; Kushal K. Dey; John Novembre; Matthew Stephens (Bioinform., 2019)