A Computer Simulation of Cerebral Neocortex: Computational Capabilities of Nonlinear Neural Networks. - Alexander Singer; John P. Donoghue (NIPS, 1987)

Probabilistic Inference of Hand Motion from Neural Activity in Motor Cortex. - Yun Gao; Michael J. Black; Elie Bienenstock; Shy Shoham; John P. Donoghue (NIPS, 2001)

Neural Decoding of Cursor Motion Using a Kalman Filter. - Wei Wu; Michael J. Black; Yun Gao; Elie Bienenstock; Mijail Serruya; A. Shaikhouni; John P. Donoghue (NIPS, 2002)

Robustness of neuroprosthetic decoding algorithms. - Mijail Serruya; Nicholas G. Hatsopoulos; Matthew Fellows; Liam Paninski; John P. Donoghue (Biol. Cybern., 2003)

Microelectrode array fabrication by electrical discharge machining and chemical etching. - Timothy Fofonoff; Sylvain Martel; Nicholas G. Hatsopoulos; John P. Donoghue; Ian W. Hunter (IEEE Trans. Biomed. Eng., 2004)

On the variability of manual spike sorting. - Frank D. Wood; Michael J. Black; Carlos Vargas-Irwin; Matthew Fellows; John P. Donoghue (IEEE Trans. Biomed. Eng., 2004)

Modeling and decoding motor cortical activity using a switching Kalman filter. - Wei Wu; Michael J. Black; David Mumford; Yun Gao; Elie Bienenstock; John P. Donoghue (IEEE Trans. Biomed. Eng., 2004)

Statistical encoding model for a primary motor cortical brain-machine interface. - Shy Shoham; Liam Paninski; Matthew Fellows; Nicholas G. Hatsopoulos; John P. Donoghue; Richard A. Normann (IEEE Trans. Biomed. Eng., 2005)

"Neural Engineering". - John P. Donoghue (EMBC, 2006)

Bayesian Population Decoding of Motor Cortical Activity Using a Kalman Filter. - Wei Wu; Yun Gao; Elie Bienenstock; John P. Donoghue; Michael J. Black (Neural Comput., 2006)

Nonparametric Modeling of Neural Point Processes via Stochastic Gradient Boosting Regression. - Wilson Truccolo; John P. Donoghue (Neural Comput., 2007)

Continuous Control of the DLR Light-Weight Robot III by a Human with Tetraplegia Using the BrainGate2 Neural Interface System. - Joern Vogel; Sami Haddadin; John D. Simeral; Sergey D. Stavisky; Daniel Bacher; Leigh R. Hochberg; John P. Donoghue; Patrick van der Smagt (ISER, 2010)

Listening to Brain Microcircuits for Interfacing With External World - Progress in Wireless Implantable Microelectronic Neuroengineering Devices. - Arto V. Nurmikko; John P. Donoghue; Leigh R. Hochberg; William R. Patterson; Yoon-Kyu Song; Christopher W. Bull; David A. Borton; Farah Laiwalla; Sunmee Park; Ming Yin; Juan Aceros (Proc. IEEE, 2010)

Decoding 3-D Reach and Grasp Kinematics From High-Frequency Local Field Potentials in Primate Primary Motor Cortex. - Jun Zhuang; Wilson Truccolo; Carlos Vargas-Irwin; John P. Donoghue (IEEE Trans. Biomed. Eng., 2010)

Prediction of Imagined Single-Joint Movements in a Person With High-Level Tetraplegia. - A. Bolu Ajiboye; John D. Simeral; John P. Donoghue; Leigh R. Hochberg; Robert F. Kirsch (IEEE Trans. Biomed. Eng., 2012)

An assistive decision-and-control architecture for force-sensitive hand-arm systems driven by human-machine interfaces. - Jörn Vogel; Sami Haddadin; Beata Jarosiewicz; John D. Simeral; Daniel Bacher; Leigh R. Hochberg; John P. Donoghue; Patrick van der Smagt (Int. J. Robotics Res., 2015)

Spike Train SIMilarity Space (SSIMS): A Framework for Single Neuron and Ensemble Data Analysis. - Carlos E. Vargas-Irwin; David M. Brandman; Jonas B. Zimmermann; John P. Donoghue; Michael J. Black (Neural Comput., 2015)

Modulation Depth Estimation and Variable Selection in State-Space Models for Neural Interfaces. - Wasim Q. Malik; Leigh R. Hochberg; John P. Donoghue; Emery N. Brown (IEEE Trans. Biomed. Eng., 2015)