Robustness of Network Measures to Link Errors. - John Platig; Edward Ott; Michelle Girvan (CoRR, 2013)

Bipartite Community Structure of eQTLs. - John Platig; Peter J. Castaldi; Dawn L. DeMeo; John Quackenbush (PLoS Comput. Biol., 2016)

Tissue-aware RNA-Seq processing and normalization for heterogeneous and sparse data. - Joseph N. Paulson; Cho-Yi Chen; Camila Miranda Lopes-Ramos; Marieke L. Kuijjer; John Platig; Abhijeet R. Sonawane; Maud Fagny; Kimberly Glass; John Quackenbush (BMC Bioinform., 2017)

Gene Regulatory Network Inference as Relaxed Graph Matching. - Deborah A. Weighill; Marouen Ben Guebila; Camila Miranda Lopes-Ramos; Kimberly Glass; John Quackenbush; John Platig; Rebekka Burkholz (AAAI, 2021)

GRAND: a database of gene regulatory network models across human conditions. - Marouen Ben Guebila; Camila Miranda Lopes-Ramos; Deborah A. Weighill; Abhijeet Rajendra Sonawane; Rebekka Burkholz; Behrouz Shamsaei; John Platig; Kimberly Glass; Marieke L. Kuijjer; John Quackenbush (Nucleic Acids Res., 2022)

Partial correlation network analysis identifies coordinated gene expression within a regional cluster of COPD genome-wide association signals. - Michele Gentili; Kimberly Glass; Enrico Maiorino; Brian D. Hobbs; Zhonghui Xu; Peter J. Castaldi; Michael H. Cho; Craig P. Hersh; Dandi Qiao; Jarrett D. Morrow; Vincent J. Carey; John Platig; et al. (PLoS Comput. Biol., 2024)