Performance modeling of the advanced field artillery tactical data system. - John R. James; Daniel Ragsdale; Joseph H. Schafer; Timothy Presby (SMC, 2000)

Modeling of information dominance in complex systems: A system partitioning and hybrid control framework. - John R. James (HICSS, 2003)

Using the Trees to Find the Forest: Trustworthy Computing as a Systems-Level Issue. - John R. James; Frank Mabry (IWIA, 2003)

Architecture of a cyber defense competition. - Wayne Schepens; John R. James (SMC, 2003)

Building Trustworthy Systems: Guided State Estimation as a Feasible Approach for Interpretation, Decision and Action Based on Sensor Data . - John R. James; Frank Mabry (HICSS, 2004)

Scholars portal: beyond simple metasearch. - Krisellen Maloney; John R. James (JCDL, 2004)

Unicode Steganographic Exploits: Maintaining Enterprise Border Security. - Frank Mabry; John R. James; Aaron J. Ferguson (IEEE Secur. Priv., 2007)

Seeing the Real World: Sharing Protected Data in Real Time. - John R. James; Frank Mabry; Kevin Huggins (HICSS, 2012)

Cyber-physical situation awareness and decision support. - John R. James; Frank Mabry; Aaron St. Leger; Tom Cook; Kevin Huggins (NSW, 2013)

An experimental framework for investigating hashgraph algorithm transaction speed. - John R. James; Daniel Hawthorne; Katherine Duncan; Aaron St. Leger; Joseph Sagisi; Michael Collins (BlockSys@SenSys, 2019)