C*: A C++ -like Language for Data-Parallel Computation. - John R. Rose (C++ Workshop, 1987)

Implementing a Compiler in C++. - John R. Rose (C++ Workshop, 1987)

C*: An Extended C Language. - John R. Rose; Guy L. Steele Jr. (C++ Workshop, 1987)

Fast Dispatch Mechanisms for Stock Hardware. - John R. Rose (OOPSLA, 1988)

Refined Types: Highly Differentiated Type Systems and Their Use in the Design of Intermediate Langages. - John R. Rose (PLDI, 1988)

The Use of Multimethods and Method Combination in a CLOS Based Window System Interface. - Hans Muller; John R. Rose; James Kempf; Tayloe Stansbury (OOPSLA, 1989)

Integrating the Scheme and C Languages. - John R. Rose; Hans Muller (LISP and Functional Programming, 1992)

Knowledge Discovery in Reaction Databases. - John R. Rose; Herbert L. Gelernter (CIKM, 1993)

Philosophical Agents. - John R. Rose; Michael N. Huhns (IEEE Internet Comput., 2001)

An agent architecture for long-term robustness. - John R. Rose; Michael N. Huhns; Soumik Sinha Roy; William H. Turkett Jr. (AAMAS, 2002)

Social Organization in a Software Agent Community with a Non-zero-Sum Game Interaction Model. - Matti A. Vanninen; John R. Rose (RASTA, 2002)

An Evaluation of Philosophical Agent Architectures for Mission Robustness. - John R. Rose; William H. Turkett Jr.; Michael N. Huhns; Soumik Sinha Roy (WRAC, 2002)

Massive Deliberation. - William H. Turkett Jr.; John R. Rose; Michael N. Huhns (IEEE Internet Comput., 2003)

Parallel algorithms for Bayesian phylogenetic inference. - Xizhou Feng; Duncan A. Buell; John R. Rose; Peter J. Waddell (J. Parallel Distributed Comput., 2003)

Dblox: a genome-wide test for ancient segmental duplication. - Robert Friedman; Vikram Ekollu; John R. Rose; Austin L. Hughes (Bioinform., 2004)

Exploiting Belief Locality in Run-Time Decision-Theoretic Planners. - William H. Turkett Jr.; John R. Rose (FLAIRS, 2005)

Correlation of amino acid preference and mammalian viral genome type. - John R. Rose; William H. Turkett Jr.; Iulia C. Oroian; William W. Laegreid; John W. Keele (Bioinform., 2005)

Mutual Information Measure for Distinguishing Coding and Non-Coding DNA Sequences. - John R. Rose; Achraf El Allali (BIOCOMP, 2008)

Bytecodes meet combinators: invokedynamic on the JVM. - John R. Rose (VMIL@SPLASH, 2009)

A neural network approach to the identification of b-/y-ions in MS/MS spectra. - James P. Cleveland; John R. Rose (BIBM, 2012)

MGC: a metagenomic gene caller. - Achraf El Allali; John R. Rose (BMC Bioinform., 2013)

HPMA: High-performance metagenomic alignment tool, on a large-scale GPU cluster. - Ibrahim Savran; John R. Rose (BIBM, 2015)

Protecting Patients' Data: An Efficient Method for Health Data Privacy. - Mark Daniels; John R. Rose; Csilla Farkas (ARES, 2018)

Review Helpfulness Assessment based on Convolutional Neural Network. - Xianshan Qu; Xiaopeng Li 001; John R. Rose (CoRR, 2018)

Exploring Machine Learning Techniques to Improve Peptide Identification. - Fawad Kirmani; Bryan Jeremy Lane; John R. Rose (BIBE, 2019)

Detecting Adversarial Attacks in the Context of Bayesian Networks. - Emad Alsuwat; Hatim Alsuwat; John R. Rose; Marco Valtorta; Csilla Farkas (DBSec, 2019)

Modeling Concept Drift in the Context of Discrete Bayesian Networks. - Hatim Alsuwat; Emad Alsuwat; Marco Valtorta; John R. Rose; Csilla Farkas (KDIR, 2019)

An Attention Model of Customer Expectation to Improve Review Helpfulness Prediction. - Xianshan Qu; Xiaopeng Li 001; Csilla Farkas; John R. Rose (ECIR (1), 2020)

Review helpfulness evaluation and recommendation based on an attention model of customer expectation. - Xianshan Qu; Xiaopeng Li 001; Csilla Farkas; John R. Rose (Inf. Retr. J., 2021)

Untangling chaos in discussion forums: A temporal analysis of topic-relevant forum posts in MOOCs. - Bokai Yang; Hengtao Tang; Ling Hao; John R. Rose (Comput. Educ., 2022)

Nighttime Vehicle Classification based on Thermal Images. - Xianshan Qu; Nathan Huynh; Robert L. Mullen; John R. Rose (SERA, 2023)

Identifying Proteotypic Peptides via Deep Learning. - Fawad Kirmani; Bryan Jeremy Lane; John R. Rose (ICBRA, 2024)