Look Who's Refueling the Technology Race. - John R. Wallace (ITC, 1986)

The back-buffer algorithm: An extension of the radiosity method to dynamic environments. - Daniel R. Baum; John R. Wallace; Michael F. Cohen; Donald P. Greenberg (Vis. Comput., 1986)

A two-pass solution to the rendering equation: A synthesis of ray tracing and radiosity methods. - John R. Wallace; Michael F. Cohen; Donald P. Greenberg (SIGGRAPH, 1987)

A progressive refinement approach to fast radiosity image generation. - Michael F. Cohen; Shenchang Eric Chen; John R. Wallace; Donald P. Greenberg (SIGGRAPH, 1988)

A Ray tracing algorithm for progressive radiosity. - John R. Wallace; K. A. Elmquist; Eric A. Haines (SIGGRAPH, 1989)

Radiosity and realistic image synthesis. - Michael F. Cohen; John R. Wallace (Academic Press, 1993)

A Biologically Informed Method for Detecting Associations with Rare Variants. - Carrie C. Buchanan; John R. Wallace; Alex T. Frase; Eric Torstenson; Sarah A. Pendergrass; Marylyn D. Ritchie (EvoBIO, 2012)

Using BioBin to Explore Rare Variant Population Stratification. - Carrie Moore; John R. Wallace; Alex T. Frase; Sarah A. Pendergrass; Marylyn D. Ritchie (Pacific Symposium on Biocomputing, 2013)

Next-Generation Analysis of Cataracts: Determining Knowledge Driven Gene-Gene Interactions Using Biofilter, and Gene-Environment Interactions Using the PhenX Toolkit. - Sarah A. Pendergrass; Shefali S. Verma; Emily Rose Holzinger; Carrie Moore; John R. Wallace; Scott M. Dudek; Wayne Huggins; Terrie E. Kitchner; Carol Waudby; Richard L. Berg; Catherine A. McCarty; Marylyn D. Ritchie (Pacific Symposium on Biocomputing, 2013)

Genomic analyses with biofilter 2.0: knowledge driven filtering, annotation, and model development. - Sarah A. Pendergrass; Alex T. Frase; John R. Wallace; Daniel Wolfe; Neerja Katiyar; Carrie Moore; Marylyn D. Ritchie (BioData Min., 2013)

Binning Somatic Mutations Based on Biological Knowledge for Predicting Survival: An Application in Renal Cell Carcinoma. - Dokyoon Kim; Ruowang Li; Scott M. Dudek; John R. Wallace; Marylyn D. Ritchie (Pacific Symposium on Biocomputing, 2015)

Knowledge Driven Binning and PheWAS Analysis in Marshfield Personalized Medicine Research Project Using BioBin. - Anna Okula Basile; John R. Wallace; Peggy L. Peissig; Catherine A. McCarty; Murray H. Brilliant; Marylyn D. Ritchie (PSB, 2016)

Integrating Clinical Laboratory Measures and ICD-9 Code Diagnoses in Phenome-Wide Association Studies. - Anurag Verma; Joseph B. Leader; Shefali S. Verma; Alex T. Frase; John R. Wallace; Scott M. Dudek; Daniel R. Lavage; Cristopher V. Van Hout; Frederick E. Dewey; John Penn; Alexander E. Lopez; John D. Overton; et al. (PSB, 2016)

A biologically informed method for detecting rare variant associations. - Carrie Colleen Buchanan Moore; Anna Okula Basile; John R. Wallace; Alex Thomas Frase; Marylyn DeRiggi Ritchie (BioData Min., 2016)

Novel features and enhancements in BioBin, a tool for the biologically inspired binning and association analysis of rare variants. - Anna Okula Basile; Marta Byrska-Bishop; John R. Wallace; Alex Thomas Frase; Marylyn D. Ritchie (Bioinform., 2018)