Towards a Better Understanding of Memory-based Reasoning Systems. - John Rachlin; Simon Kasif; Steven Salzberg; David W. Aha (ICML, 1994)

Agent-Based Cooperative Scheduling. - Seshashayee S. Murthy; John Rachlin; Rama Akkiraju; Frederick Y. Wu (AAAI Workshop: Constraints & Agents, 1997)

A-Teams: An Agent Architecture for Optimization and Decision Support. - John Rachlin; Richard Goodwin; Sesh Murthy; Rama Akkiraju; Frederick Y. Wu; Santhosh Kumaran; Raja Das (ATAL, 1998)

A Probabilistic Framework for Memory-Based Reasoning. - Simon Kasif; Steven Salzberg; David L. Waltz; John Rachlin; David W. Aha (Artif. Intell., 1998)

Cooperative Multiobjective Decision Support for the Paper Industry. - Sesh Murthy; Rama Akkiraju; Richard Goodwin; Pinar Keskinocak; John Rachlin; Frederick Y. Wu; James Yeh; Robert Fuhrer; Santhosh Kumaran; Alok Aggarwal; Martin C. Sturzenbecker; Ranga Jayaraman; et al. (Interfaces, 1999)

MuPlex: multi-objective multiplex PCR assay design. - John Rachlin; Chunming Ding; Charles Cantor; Simon Kasif (Nucleic Acids Res., 2005)

Multi-Node Graphs: A Framework for Multiplexed Biological Assays. - Noga Alon; Vera Asodi; Charles Cantor; Simon Kasif; John Rachlin (J. Comput. Biol., 2006)

COMBREX: a project to accelerate the functional annotation of prokaryotic genomes. - Richard J. Roberts; Yi-Chien Chang; Zhenjun Hu; John Rachlin; Brian P. Anton; Revonda M. Pokrzywa; Han-Pil Choi; Lina L. Faller; Jyotsna Guleria; Genevieve Housman; Niels Klitgord; Varun Mazumdar; et al. (Nucleic Acids Res., 2011)

COMBREX-DB: an experiment centered database of protein function: knowledge, predictions and knowledge gaps. - Yi-Chien Chang; Zhenjun Hu; John Rachlin; Brian P. Anton; Simon Kasif; Richard J. Roberts; Martin Steffen (Nucleic Acids Res., 2016)