A Traversal Cache Framework for FPGA Acceleration of Pointer Data Structures: A Case Study on Barnes-Hut N-body Simulation. - James Coole; John Robert Wernsing; Greg Stitt (ReConFig, 2009)

A scalable performance prediction heuristic for implementation planning on heterogeneous systems. - John Robert Wernsing; Greg Stitt (ESTIMedia, 2010)

Elastic computing: a framework for transparent, portable, and adaptive multi-core heterogeneous computing. - John Robert Wernsing; Greg Stitt (LCTES, 2010)

The RACECAR heuristic for automatic function specialization on multi-core heterogeneous systems. - John Robert Wernsing; Greg Stitt; Jeremy Fowers (CASES, 2012)

RACECAR: a heuristic for automatic function specialization on multi-core heterogeneous systems. - John Robert Wernsing; Greg Stitt (PPoPP, 2012)

Elastic computing: A portable optimization framework for hybrid computers. - John Robert Wernsing; Greg Stitt (Parallel Comput., 2012)

A performance and energy comparison of convolution on GPUs, FPGAs, and multicore processors. - Jeremy Fowers; Greg Brown; John Robert Wernsing; Greg Stitt (ACM Trans. Archit. Code Optim., 2013)

Trill: A High-Performance Incremental Query Processor for Diverse Analytics. - Badrish Chandramouli; Jonathan Goldstein; Mike Barnett 001; Robert DeLine; John C. Platt; James F. Terwilliger; John Wernsing (Proc. VLDB Endow., 2014)

Tempe: Live scripting for live data. - Robert DeLine; Danyel Fisher; Badrish Chandramouli; Jonathan Goldstein; Michael Barnett 001; James F. Terwilliger; John Wernsing (VL/HCC, 2015)

CryptoNets: Applying Neural Networks to Encrypted Data with High Throughput and Accuracy. - Ran Gilad-Bachrach; Nathan Dowlin; Kim Laine; Kristin E. Lauter; Michael Naehrig; John Wernsing (ICML, 2016)

Machine Teaching: A New Paradigm for Building Machine Learning Systems. - Patrice Y. Simard; Saleema Amershi; David Maxwell Chickering; Alicia Edelman Pelton; Soroush Ghorashi; Christopher Meek; Gonzalo A. Ramos; Jina Suh; Johan Verwey; Mo Wang; John Wernsing (CoRR, 2017)

Manual for Using Homomorphic Encryption for Bioinformatics. - Nathan Dowlin; Ran Gilad-Bachrach; Kim Laine; Kristin E. Lauter; Michael Naehrig; John Wernsing (Proc. IEEE, 2017)