Improvements in the computer enumeration of permutation isomers. - John S. Garavelli; Jack E. Leonard (Comput. Chem., 1985)

Comments on papers concerning computer enumeration of permutation isomers. - Hans Dolhaine; John S. Garavelli; Jack E. Leonard (Comput. Chem., 1986)

An algorithm for the multiplication of symmetric polynomials. - John S. Garavelli (ACM Trans. Math. Softw., 1988)

GBPARSE: a parser for the GenBank flat-file format with the new feature table format. - R. L. Read; D. Davison; J. E. Chappelear; John S. Garavelli (Comput. Appl. Biosci., 1992)

The Protein Information Resource (PIR) and the PIR-International Protein Sequence Database. - David G. George; Robert J. Dodson; John S. Garavelli; Daniel H. Haft; Lois T. Hunt; Christopher R. Marzec; Bruce C. Orcutt; Kathryn E. Sidman; Geetha Y. Srinivasarao; Lai-Su L. Yeh; Leslie Arminski; Robert S. Ledley; et al. (Nucleic Acids Res., 1997)

The PIR-International Protein Sequence Database. - Winona C. Barker; John S. Garavelli; Daniel H. Haft; Lois T. Hunt; Christopher R. Marzec; Bruce C. Orcutt; Geetha Y. Srinivasarao; Lai-Su L. Yeh; Robert S. Ledley; Hans-Werner Mewes; Friedhelm Pfeiffer; Akira Tsugita (Nucleic Acids Res., 1998)

The PIR-International Protein Sequence Database. - Winona C. Barker; John S. Garavelli; Peter B. McGarvey; Christopher R. Marzec; Bruce C. Orcutt; Geetha Y. Srinivasarao; Lai-Su L. Yeh; Robert S. Ledley; Hans-Werner Mewes; Friedhelm Pfeiffer; Akira Tsugita; Cathy H. Wu (Nucleic Acids Res., 1999)

The RESID Database of protein structure modifications. - John S. Garavelli (Nucleic Acids Res., 1999)

PIR: a new resource for bioinformatics. - Peter B. McGarvey; Hongzhan Huang; Winona C. Barker; Bruce C. Orcutt; John S. Garavelli; Geetha Y. Srinivasarao; Lai-Su L. Yeh; Chunlin Xiao; Cathy H. Wu (Bioinform., 2000)

The Protein Information Resource (PIR). - Winona C. Barker; John S. Garavelli; Hongzhan Huang; Peter B. McGarvey; Bruce C. Orcutt; Geetha Y. Srinivasarao; Chunlin Xiao; Lai-Su L. Yeh; Robert S. Ledley; Joseph F. Janda; Friedhelm Pfeiffer; Hans-Werner Mewes; et al. (Nucleic Acids Res., 2000)

The RESID Database of protein structure modifications: 2000 update. - John S. Garavelli (Nucleic Acids Res., 2000)

Protein Information Resource: a community resource for expert annotation of protein data. - Winona C. Barker; John S. Garavelli; Zhenglin Hou; Hongzhan Huang; Robert S. Ledley; Peter B. McGarvey; Hans-Werner Mewes; Bruce C. Orcutt; Friedhelm Pfeiffer; Akira Tsugita; Cholanayakanahalli R. Vinayaka; Chunlin Xiao; et al. (Nucleic Acids Res., 2001)

The RESID Database of protein structure modifications and the NRL-3D Sequence-Structure Database. - John S. Garavelli; Zhenglin Hou; Nagarajan Pattabiraman; Robert M. Stephens (Nucleic Acids Res., 2001)

The RESID Database of Protein Modifications: 2003 developments. - John S. Garavelli (Nucleic Acids Res., 2003)

ProSight PTM: an integrated environment for protein identification and characterization by top-down mass spectrometry. - Richard D. LeDuc; Gregory K. Taylor; Yong-Bin Kim; Thomas E. Januszyk; Lee H. Bynum; Joseph V. Sola; John S. Garavelli; Neil L. Kelleher (Nucleic Acids Res., 2004)

"Good Annotation Practice" for Chemical Data in Biology. - Kirill Degtyarenko; Marcus Ennis; John S. Garavelli (Silico Biol., 2007)

PIRSitePredict for protein functional site prediction using position-specific rules. - Chuming Chen; Qinghua Wang 003; Hongzhan Huang; Cholanayakanahalli R. Vinayaka; John S. Garavelli; Cecilia N. Arighi; Darren A. Natale; Cathy H. Wu (Database J. Biol. Databases Curation, 2019)

UniProt: the universal protein knowledgebase in 2021. - Alex Bateman; Maria Jesus Martin; Sandra E. Orchard; Michele Magrane; Rahat Agivetova; Shadab Ahmad; Emanuele Alpi; Emily H. Bowler-Barnett; Ramona Britto; Borisas Bursteinas; Hema Bye-A-Jee; Ray Coetzee; et al. (Nucleic Acids Res., 2021)