Robust Inference of Cell-to-Cell Expression Variations from Single- and K-Cell Profiling. - Manikandan Narayanan; Andrew J. Martins; John S. Tsang (PLoS Comput. Biol., 2016)

eNetXplorer: an R package for the quantitative exploration of elastic net families for generalized linear models. - Julián Candia; John S. Tsang (BMC Bioinform., 2019)

ImmuneRegulation: a web-based tool for identifying human immune regulatory elements. - Selim Kalayci; Myvizhi Esai Selvan; Irene Ramos; Chris Cotsapas; Eva Harris; Eun-Young Kim; Ruth R. Montgomery; Gregory A. Poland; Bali Pulendran; John S. Tsang; Robert J. Klein; Zeynep H. Gümüs (Nucleic Acids Res., 2019)