A Distributed Software Runtime Environment to Support Testbed Experimentation using ADL/ADS. - John T. Ellis (ICDE, 1984)

Distributed Software Prototyping with ADS. - James W. Hooper; John T. Ellis; T. A. Johnson (ICSE, 1985)

A guide to in silico vaccine discovery for eukaryotic pathogens. - Stephen J. Goodswen; Paul J. Kennedy; John T. Ellis (Briefings Bioinform., 2013)

A novel strategy for classifying the output from an in silico vaccine discovery pipeline for eukaryotic pathogens using machine learning algorithms. - Stephen J. Goodswen; Paul J. Kennedy; John T. Ellis (BMC Bioinform., 2013)

Vacceed: a high-throughput in silico vaccine candidate discovery pipeline for eukaryotic pathogens based on reverse vaccinology. - Stephen J. Goodswen; Paul J. Kennedy; John T. Ellis (Bioinform., 2014)

Tertiary structure-based prediction of conformational B-cell epitopes through B factors. - Jing Ren; Qian Liu 014; John T. Ellis; Jinyan Li 001 (Bioinform., 2014)

Influenza A HA's conserved epitopes and broadly neutralizing antibodies: A prediction method. - Jing Ren; John T. Ellis; Jinyan Li 001 (J. Bioinform. Comput. Biol., 2014)

Positive-unlabeled learning for the prediction of conformational B-cell epitopes. - Jing Ren; Qian Liu; John T. Ellis; Jinyan Li (BMC Bioinform., 2015)

Dynamic island model based on spectral clustering in genetic algorithm. - Qinxue Meng; Jia Wu 001; John T. Ellis; Paul J. Kennedy (IJCNN, 2017)

Staged heterogeneity learning to identify conformational B-cell epitopes from antigen sequences. - Jing Ren; Jiangning Song; John T. Ellis; Jinyan Li 001 (BMC Genom., 2017)