De novo transcriptome assemblies and annotation for pacifie whiteleg shrimp. - Noushin Ghaffari; Osama A. Arshad; Hyundoo Jeong; John Thiltges; Michael F. Criscitiello; Byung-Jun Yoon; Aniruddha Datta; Charles D. Johnson (GlobalSIP, 2014)

Examining De Novo Transcriptome Assemblies via a Quality Assessment Pipeline. - Noushin Ghaffari; Osama A. Arshad; Hyundoo Jeong; John Thiltges; Michael F. Criscitiello; Byung-Jun Yoon; Aniruddha Datta; Charles D. Johnson (IEEE ACM Trans. Comput. Biol. Bioinform., 2018)

The Service Analysis and Network Diagnosis Data Pipeline. - Derek Weitzel; Shawn McKee; Brian Paul Bockelman; John Thiltges; Marian Babik; Ilija Vukotic (INDIS@SC, 2021)

Coffea-casa: an analysis facility prototype. - Matous Adamec; Garhan Attebury; Kenneth Bloom; Brian Bockelman; Carl Lundstedt; Oksana Shadura; John Thiltges (CoRR, 2021)

The Service Analysis and Network Diagnosis DataPipeline. - Derek Weitzel; Shawn McKee; Brian Paul Bockelman; John Thiltges; Marian Babik; Ilija Vukotic (CoRR, 2021)

Collaborative Computing Support for Analysis Facilities Exploiting Software as Infrastructure Techniques. - Maria Acosta Flechas; Garhan Attebury; Kenneth Bloom; Brian Bockelman; Lindsey Gray; Burt Holzman; Carl Lundstedt; Oksana Shadura; Nicholas Smith; John Thiltges (CoRR, 2022)

Coffea-Casa: Building composable analysis facilities for the HL-LHC. - Sam Albin; Garhan Attebury; Kenneth Bloom; Brian Bockelman; Carl Lundstedt; Oksana Shadura; John Thiltges (CoRR, 2023)