A Simple Text Mining Approach for Ranking Pairwise Associations in Biomedical Applications. - Finn Kuusisto; John W. Steill; Zhaobin Kuang; James A. Thomson; David Page; Ron M. Stewart (CRI, 2017)

Automated minute scale RNA-seq of pluripotent stem cell differentiation reveals early divergence of human and mouse gene expression kinetics. - Chris Barry; Matthew T. Schmitz; Cara Argus; Jennifer M. Bolin; Mitchell D. Probasco; Ning Leng; Bret Duffin; John W. Steill; Scott Swanson; Brian E. McIntosh; Ron M. Stewart; Christina Kendziorski; et al. (PLoS Comput. Biol., 2019)

KinderMiner Web: a simple web tool for ranking pairwise associations in biomedical applications. - Finn Kuusisto; Daniel Ng; John W. Steill; Ian Ross; Miron Livny; James A. Thomson; David Page; Ron M. Stewart (F1000Research, 2020)

Automated Extraction and Visualization of Protein-Protein Interaction Networks and Beyond: A Text-Mining Protocol. - Kalpana Raja; Jeyakumar Natarajan; Finn Kuusisto; John W. Steill; Ian Ross; James A. Thomson; Ron M. Stewart (Protein-Protein Interaction Networks, 2020)

Interspecies chimeric conditions affect the developmental rate of human pluripotent stem cells. - Jared Brown; Chris Barry; Matthew T. Schmitz; Cara Argus; Jennifer M. Bolin; Michael P. Schwartz; Amy Van Aartsen; John W. Steill; Scott Swanson; Ron M. Stewart; James A. Thomson; Christina Kendziorski (PLoS Comput. Biol., 2021)

Serial KinderMiner (SKiM) discovers and annotates biomedical knowledge using co-occurrence and transformer models. - Robert J. Millikin; Kalpana Raja; John W. Steill; Cannon Lock; Xuancheng Tu; Ian Ross; Lam C. Tsoi; Finn Kuusisto; Zijian Ni; Miron Livny; Brian Bockelman; James A. Thomson; et al. (BMC Bioinform., 2023)