Load-Balancing and Performance of a Gridless Particle Simulation on MIMD, SIMD, and Vector Supercomputers. - Steve Plimpton; Isaac Shokair; John Wagner; Jeff Jortner (PP, 1991)

A robust failure diagnostic system for thermofluid processes. - John Wagner; Rahmat Shoureshi (Autom., 1992)

Nonlinear modeling and control of automotive vibration isolation systems. - John Wagner; X. Liu (ACC, 2000)

High Order Linearization Equation (HOLE) Attack on Multivariate Public Key Cryptosystems. - Jintai Ding; Lei Hu; Xuyun Nie; Jianyu Li; John Wagner (IACR Cryptol. ePrint Arch., 2006)

Cryptanalysis of the TRMC-4 Public Key Cryptosystem. - Xuyun Nie; Lei Hu; Jintai Ding; Jianyu Li; John Wagner (ACNS, 2007)

Making the Giant Leap with Augmented Cognition Technologies: What Will Be the First "Killer App"? - Chris Forsythe; Chris Berka; Robert Matthews; John Wagner (HCI (16), 2007)

Cryptanalysis of Rational Multivariate Public Key Cryptosystems. - Jintai Ding; John Wagner (IACR Cryptol. ePrint Arch., 2007)

Stability and Time-Delay Modeling of Negative Feedback Loops. - John Wagner; Gustavo Stolovitzky (Proc. IEEE, 2008)

An Ultrascalable Solution to Large-scale Neural Tissue Simulation. - James R. Kozloski; John Wagner (Frontiers Neuroinformatics, 2011)

Supercomputing enabling exhaustive statistical analysis of genome wide association study data: Preliminary results. - Matthias Reumann; Enes Makalic; Benjamin W. Goudey; Michael Inouye; Adrian Bickerstaffe; Minh Bui; Daniel J. Park; Miroslaw K. Kapuscinski; Daniel F. Schmidt; Zeyu Zhou; Guoqi Q. Qian; Justin Zobel; et al. (EMBC, 2012)

Type refinement for static analysis of JavaScript. - Vineeth Kashyap; John Sarracino; John Wagner; Ben Wiedermann; Ben Hardekopf (DLS, 2013)

Modeling and analysis of an atmospheric driven Atmos clock with mechanical escapement control. - Shreyas Patel; David Moline; John Wagner (ECC, 2013)

JSAI: a static analysis platform for JavaScript. - Vineeth Kashyap; Kyle Dewey; Ethan A. Kuefner; John Wagner; Kevin Gibbons; John Sarracino; Ben Wiedermann; Ben Hardekopf (SIGSOFT FSE, 2014)

JSAI: Designing a Sound, Configurable, and Efficient Static Analyzer for JavaScript. - Vineeth Kashyap; Kyle Dewey; Ethan A. Kuefner; John Wagner; Kevin Gibbons; John Sarracino; Ben Wiedermann; Ben Hardekopf (CoRR, 2014)

High performance computing enabling exhaustive analysis of higher order single nucleotide polymorphism interaction in Genome Wide Association Studies. - Benjamin Goudey; Mani Abedini; John L. Hopper; Michael Inouye; Enes Makalic; Daniel F. Schmidt; John Wagner; Zeyu Zhou; Justin Zobel; Matthias Reumann (Health Inf. Sci. Syst., 2015)

Dynamic Modelling Reveals 'Hotspots' on the Pathway to Enzyme-Substrate Complex Formation. - Shane E. Gordon; Daniel K. Weber; Matthew T. Downton; John Wagner; Matthew A. Perugini (PLoS Comput. Biol., 2016)

Mathematical model of TGF-βsignalling: feedback coupling is consistent with signal switching. - Shabnam Khatibi; Hong-Jian Zhu; John Wagner; Chin Wee Tan; Jonathan H. Manton; Antony W. Burgess (BMC Syst. Biol., 2017)

Dendritic spines modify action potential back-propagation in a multicompartment neuronal model. - Tuan M. Hoang Trong; Sarah E. Motley; John Wagner; Robert R. Kerr; James R. Kozloski (IBM J. Res. Dev., 2017)

Internet of Blockchains: Techniques and Challenges Ahead. - Hoang Tam Vo; Ziyuan Wang 003; Dileban Karunamoorthy; John Wagner; Ermyas Abebe; Mukesh K. Mohania (iThings/GreenCom/CPSCom/SmartData, 2018)

Towards a Predictive Patent Analytics and Evaluation Platform. - Nebula Alam; Khoi-Nguyen Tran; Sue Ann Chen; John Wagner; Josh Andres; Mukesh K. Mohania (ECML/PKDD (3), 2019)

Facial Anthropometric Measurements and Photographs - An Interdisciplinary Study. - Jasbir Dhaliwal; John Wagner; Shu Ling Leong; Chern Hong Lim (IEEE Access, 2020)

A novel feature extraction method based on highly expressed SNPs for tissue-specific gene prediction. - Jasbir Dhaliwal; John Wagner (J. Big Data, 2021)

Constraint Hypergraphs as a Unifying Framework for Digital Twins. - John Morris; Douglas L. Van Bossuyt; Edward Louis; Gregory Mocko; John Wagner (CoRR, 2025)