New Protocols for Asymmetric Communication Channels. - John Watkinson; Micah Adler; Faith E. Fich (SIROCCO, 2001)

Identification of gene interactions associated with disease from gene expression data using synergy networks. - John Watkinson; Xiaodong Wang 001; Tian Zheng; Dimitris Anastassiou (BMC Syst. Biol., 2008)

Synergy Disequilibrium Plots: graphical visualization of pairwise synergies and redundancies of SNPs with respect to a phenotype. - John Watkinson; Dimitris Anastassiou (Bioinform., 2009)

geWorkbench: an open source platform for integrative genomics. - Aris Floratos; Kenneth Smith 001; Zhou Ji; John Watkinson; Andrea Califano (Bioinform., 2010)

Biomarker Discovery Using Statistically Significant Gene Sets. - Hoon Kim; John Watkinson; Dimitris Anastassiou (J. Comput. Biol., 2011)