POEMS: parallelizable open-source efficient multibody software. - Kurt Anderson; Rudranarayan Mukherjee; James Critchley; John Ziegler; Scott Lipton (Eng. Comput., 2007)

MPath - Results Manager, a comprehensive solution to store, review and manage genomic variants from NGS-based clinical tests. - Aijazuddin Syed; Anoop Balakrishnan; Aaron Dack; John Ziegler; Shruti H. Madur; Jack Birnbaum; Jason Hwee; Meera Prasad; Mustafa Syed; Mohammad Haque; Zhen Y. Liu; Sumit Middha; et al. (AMIA, 2018)

MPath Non-NGS: Software for Analysis of Clinical Fragment and Qualitative Polymerase Chain Reaction (PCR) Assays. - Sean K. Lachhander; John Ziegler; Shoham Das; Paulo Salazar; Nana Mensah; Ivelise Rijo; Lissette Fernandez; Lin Dong; Daniela Elezovic; Ahmet Zehir; Maria Arcila (AMIA, 2019)

EPINetz: Exploration of Political Information Networks. - John Ziegler; Alexander Brand; Julian Freyberg; Tim König; Wolf J. Schünemann; Marina Walther; Michael Gertz 001 (GI-Jahrestagung, 2021)

TrendTracker: Temporal, network-based exploration of long-term Twitter trends. - John Ziegler; Johannes Sindlinger; Marina Walther; Michael Gertz 001 (ASONAM, 2023)

No Mayfly: Detection and Analysis of Long-term Twitter Trends. - John Ziegler; Michael Gertz 001 (BTW, 2023)

Who Is behind a Trend? Temporal Analysis of Interactions among Trend Participants on Twitter. - John Ziegler; Michael Gertz 001 (ICWSM, 2023)

CODY: A graph-based framework for the analysis of COnversation DYnamics in online social networks. - John Ziegler; Fabian Kneißl; Michael Gertz 001 (CoRR, 2023)

Temporal, Network-Based Media Analytics: From Model to Application. - John Ziegler (2024)