CausalTAB: the PSI-MITAB 2.8 updated format for signalling data representation and dissemination. - Livia Perfetto; Marcio Luis Acencio; Glyn Bradley; Gianni Cesareni; Noemi del-Toro; Dávid Fazekas; Henning Hermjakob; Tamás Korcsmáros; Martin Kuiper; Astrid Lægreid; Prisca Lo Surdo; Ruth C. Lovering; et al. (Bioinform., 2019)

emba: R package for analysis and visualization of biomarkers in boolean model ensembles. - John Zobolas; Martin Kuiper; Åsmund Flobak (J. Open Source Softw., 2020)

CausalBuilder: bringing the MI2CAST causal interaction annotation standard to the curator. - Vasundra Touré; John Zobolas; Martin Kuiper; Steven Vercruysse (Database J. Biol. Databases Curation, 2021)

UniBioDicts: Unified access to Biological Dictionaries. - John Zobolas; Vasundra Touré; Martin Kuiper; Steven Vercruysse (Bioinform., 2021)

Software implementations allowing new approaches toward data analysis, modeling and curation of biological knowledge for Systems Medicine. - John Zobolas (2021)

A Large-Scale Neutral Comparison Study of Survival Models on Low-Dimensional Data. - Lukas Burk; John Zobolas; Bernd Bischl; Andreas Bender 001; Marvin N. Wright; Raphael Sonabend (CoRR, 2024)