Alignment-Free Classification of G-Protein-Coupled Receptors Using Self-Organizing Maps. - Joji M. Otaki; Akihito Mori; Yoshimasa Itoh; Takashi Nakayama; Haruhiko Yamamoto (J. Chem. Inf. Model., 2006)

Secondary Structure Characterization Based on Amino Acid Composition and Availability in Proteins. - Joji M. Otaki; Motosuke Tsutsumi; Tomonori Gotoh; Haruhiko Yamamoto (J. Chem. Inf. Model., 2010)

Parallel and Antiparallel β-Strands Differ in Amino Acid Composition and Availability of Short Constituent Sequences. - Motosuke Tsutsumi; Joji M. Otaki (J. Chem. Inf. Model., 2011)

Structural analysis of eyespots: dynamics of morphogenic signals that govern elemental positions in butterfly wings. - Joji M. Otaki (BMC Syst. Biol., 2012)

GPU Acceleration for Availability Scoring of Short Constituent Amino Acid Sequences. - Yuki Kakazu; Morikazu Nakamura; Joji M. Otaki (CANDAR, 2015)

Real-Time In Vivo Imaging of the Developing Pupal Wing Tissues in the Pale Grass Blue Butterfly Zizeeria maha: Establishing the Lycaenid System for Multiscale Bioimaging. - Kanako Hirata; Joji M. Otaki (J. Imaging, 2019)