Identifiability of Causal Effects in a Multi-Agent Causal Model. - Sam Maes; Joke Reumers; Bernard Manderick (IAT, 2003)

SNPeffect: a database mapping molecular phenotypic effects of human non-synonymous coding SNPs. - Joke Reumers; Joost Schymkowitz; Jesper Ferkinghoff-Borg; Francois Stricher; Luis Serrano; Frederic Rousseau 001 (Nucleic Acids Res., 2005)

SNPeffect v2.0: a new step in investigating the molecular phenotypic effects of human non-synonymous SNPs. - Joke Reumers; Sebastian Maurer-Stroh; Joost Schymkowitz; Frederic Rousseau 001 (Bioinform., 2006)

PupaSuite: finding functional single nucleotide polymorphisms for large-scale genotyping purposes. - Lucía Conde; Juan M. Vaquerizas; Hernán Dopazo; Leonardo Arbiza; Joke Reumers; Frederic Rousseau 001; Joost Schymkowitz; Joaquín Dopazo (Nucleic Acids Res., 2006)

Joint annotation of coding and non-coding single nucleotide polymorphisms and mutations in the SNPeffect and PupaSuite databases. - Joke Reumers; Lucía Conde; Ignacio Medina; Sebastian Maurer-Stroh; Joost J. J. van Durme; Joaquín Dopazo; Frederic Rousseau 001; Joost Schymkowitz (Nucleic Acids Res., 2008)

Reconstruction of Protein Backbones from the BriX Collection of Canonical Protein Fragments. - Lies Baeten; Joke Reumers; Vicente Tur; François Stricher; Tom Lenaerts; Luis Serrano; Frederic Rousseau 001; Joost Schymkowitz (PLoS Comput. Biol., 2008)

Using structural bioinformatics to investigate the impact of non synonymous SNPs and disease mutations: scope and limitations. - Joke Reumers; Joost Schymkowitz; Frederic Rousseau 001 (BMC Bioinform., 2009)

PepX: a structural database of non-redundant protein-peptide complexes. - Peter Vanhee; Joke Reumers; Francois Stricher; Lies Baeten; Luis Serrano; Joost Schymkowitz; Frederic Rousseau 001 (Nucleic Acids Res., 2010)

An Evolutionary Trade-Off between Protein Turnover Rate and Protein Aggregation Favors a Higher Aggregation Propensity in Fast Degrading Proteins. - Greet De Baets; Joke Reumers; Javier Delgado Blanco; Joaquín Dopazo; Joost Schymkowitz; Frederic Rousseau 001 (PLoS Comput. Biol., 2011)

Huvariome: a web server resource of whole genome next-generation sequencing allelic frequencies to aid in pathological candidate gene selection. - Andrew Stubbs; Elizabeth A. McClellan; Sebastiaan Horsman; Saskia D. Hiltemann; Ivo Palli; Stephan Nouwens; Anton H. J. Koning; Frits Hoogland; Joke Reumers; Daphne Heijsman; Sigrid Swagemakers; Andreas Kremer; et al. (J. Clin. Bioinform., 2012)

SNPeffect 4.0: on-line prediction of molecular and structural effects of protein-coding variants. - Greet De Baets; Joost J. J. van Durme; Joke Reumers; Sebastian Maurer-Stroh; Peter Vanhee; Joaquín Dopazo; Joost Schymkowitz; Frederic Rousseau 001 (Nucleic Acids Res., 2012)

Pipit: visualizing functional impacts of structural variations. - Ryo Sakai; Matthieu Moisse; Joke Reumers; Jan Aerts (Bioinform., 2013)

Performance Analysis of a Parallel, Multi-node Pipeline for DNA Sequencing. - Dries Decap; Joke Reumers; Charlotte Herzeel; Pascal Costanza; Jan Fostier (PPAM (2), 2015)

Halvade: scalable sequence analysis with MapReduce. - Dries Decap; Joke Reumers; Charlotte Herzeel; Pascal Costanza; Jan Fostier (Bioinform., 2015)

VirVarSeq: a low-frequency virus variant detection pipeline for Illumina sequencing using adaptive base-calling accuracy filtering. - Bie M. P. Verbist; Kim Thys; Joke Reumers; Yves Wetzels; Koen Van der Borght; Willem Talloen; Jeroen Aerssens; Lieven Clement; Olivier Thas (Bioinform., 2015)

QQ-SNV: single nucleotide variant detection at low frequency by comparing the quality quantiles. - Koen Van der Borght; Kim Thys; Yves Wetzels; Lieven Clement; Bie M. P. Verbist; Joke Reumers; Herman van Vlijmen; Jeroen Aerssens (BMC Bioinform., 2015)

ViVaMBC: estimating viral sequence variation in complex populations from illumina deep-sequencing data using model-based clustering. - Bie M. P. Verbist; Lieven Clement; Joke Reumers; Kim Thys; Alexander Vapirev; Willem Talloen; Yves Wetzels; Joris Meys; Jeroen Aerssens; Luc Bijnens; Olivier Thas (BMC Bioinform., 2015)

A random effects model for the identification of differential splicing (REIDS) using exon and HTA arrays. - Marijke Van Moerbeke; Adetayo Kasim; Willem Talloen; Joke Reumers; Hinrich W. H. Göhlmann; Ziv Shkedy (BMC Bioinform., 2017)