Effective calibration of artificial gene regulatory networks. - Davide Agostini; Jole Costanza; Vincenzo Cutello; Luca Zammataro; Natalio Krasnogor; Mario Pavone; Giuseppe Nicosia (ECAL, 2011)

A Memetic Immunological Algorithm for Resource Allocation Problem. - Jole Costanza; Vincenzo Cutello; Mario Pavone (ICARIS, 2011)

Large Scale Agent-Based Modeling of the Humoral and Cellular Immune Response. - Giovanni Stracquadanio; Renato Umeton; Jole Costanza; Viviana Annibali; Rosella Mechelli; Mario Pavone; Luca Zammataro; Giuseppe Nicosia (ICARIS, 2011)

Computing with Metabolic Machines. - Claudio Angione; Giovanni Carapezza; Jole Costanza; Pietro Liò; Giuseppe Nicosia (Turing-100, 2012)

Multi-objective Optimisation, Sensitivity and Robustness Analysis in FBA Modelling. - Jole Costanza; Giovanni Carapezza; Claudio Angione; Pietro Liò; Giuseppe Nicosia (CMSB, 2012)

Robust design of microbial strains. - Jole Costanza; Giovanni Carapezza; Claudio Angione; Pietro Liò; Giuseppe Nicosia (Bioinform., 2012)

Pareto epsilon-dominance and identifiable solutions for BioCAD modeling. - Claudio Angione; Jole Costanza; Giovanni Carapezza; Pietro Liò; Giuseppe Nicosia (DAC, 2013)

Multi objective design for bacterial communication networks. - Claudio Angione; Giovanni Carapezza; Jole Costanza; Pietro Liò; Giuseppe Nicosia (ICC Workshops, 2013)

Design and strain selection criteria for bacterial communication networks. - Claudio Angione; Giovanni Carapezza; Jole Costanza; Pietro Liò; Giuseppe Nicosia (Nano Commun. Networks, 2013)

Pareto Optimality in Organelle Energy Metabolism Analysis. - Claudio Angione; Giovanni Carapezza; Jole Costanza; Pietro Liò; Giuseppe Nicosia (IEEE ACM Trans. Comput. Biol. Bioinform., 2013)

Programming Living Machines: The Case Study of Escherichia Coli. - Jole Costanza; Luca Zammataro; Giuseppe Nicosia (Living Machines, 2014)

Multi-objective Modeling of Ground Deformation and Gravity Changes of Volcanic Eruptions. - Piero Conca; Gilda Currenti; Giovanni Carapezza; Ciro Del Negro; Jole Costanza; Giuseppe Nicosia (MOD, 2015)

Pareto Optimal Design for Synthetic Biology. - Andrea Patane; Andrea Santoro; Jole Costanza; Giovanni Carapezza; Giuseppe Nicosia (IEEE Trans. Biomed. Circuits Syst., 2015)

Analysis and design of molecular machines. - Claudio Angione; Jole Costanza; Giovanni Carapezza; Pietro Liò; Giuseppe Nicosia (Theor. Comput. Sci., 2015)

Metabolic Circuit Design Automation by Multi-objective BioCAD. - Andrea Patané; Piero Conca; Giovanni Carapezza; Andrea Santoro; Jole Costanza; Giuseppe Nicosia (MOD, 2016)

LowMACA: exploiting protein family analysis for the identification of rare driver mutations in cancer. - Giorgio E. M. Melloni; Stefano de Pretis; Laura Riva; Mattia Pelizzola; Arnaud Céol; Jole Costanza; Heiko Müller 003; Luca Zammataro (BMC Bioinform., 2016)

Multi-objective optimization of genome-scale metabolic models: the case of ethanol production. - Andrea Patané; Giorgio Jansen; Piero Conca; Giovanni Carapezza; Jole Costanza; Giuseppe Nicosia (Ann. Oper. Res., 2019)

Inferring Pathological Metabolic Patterns in Breast Cancer Tissue from Genome-Scale Models. - Matteo N. Amaradio; Giorgio Jansen; Varun Ojha 001; Jole Costanza; Giuseppe Di Fatta; Giuseppe Nicosia (LOD (1), 2022)