A Novel Visualization Tool for Evaluating Medication Side-Effects in Multi-drug Regimens. - Jon D. Duke; Anthony Faiola; Hadi Kharrazi (HCI (4), 2009)

Data visualization speeds review of potential adverse drug events in patients on multiple medications. - Jon D. Duke; Xiaochun Li; Shaun J. Grannis (J. Biomed. Informatics, 2010)

An Ontological Representation of Adverse Drug Events. - Guoqian Jiang; Jon D. Duke; Jyotishman Pathak; Christopher G. Chute (ICBO, 2011)

Development and preliminary evidence for the validity of an instrument assessing implementation of human-factors principles in medication-related decision-support systems - I-MeDeSA. - Marianne Zachariah; Shobha Phansalkar; Hanna M. Seidling; Pamela M. Neri; Kathrin M. Cresswell; Jon D. Duke; Meryl Bloomrosen; Lynn A. Volk; David W. Bates (J. Am. Medical Informatics Assoc., 2011)

Regenstrief Institute's Next-Generation Clinical Decision Support System. - Jon D. Duke; Burke W. Mamlin; Douglas K. Martin (AMIA, 2012)

Development of Beers' Criteria Clinical Decision Support System for Potentially a Computerized Order Entry System. - Brittany Melton; Alissa L. Russ; Bruce Carlstedt; Jon D. Duke; Alan J. Zillich (AMIA, 2012)

Literature Based Drug Interaction Prediction with Clinical Assessment Using Electronic Medical Records: Novel Myopathy Associated Drug Interactions. - Jon D. Duke; Xu Han; Zhiping Wang; Abhinita Subhadarshini; Shreyas D. Karnik; Xiaochun Li; Stephen D. Hall; Yan Jin; J. Thomas Callaghan; J. Marc Overhage; David A. Flockhart; R. Matthew Strother; et al. (PLoS Comput. Biol., 2012)

Regenstrief Institute's Gopher Order Entry System: Advances in Provider Collaboration and Clinical Decision Support. - Jon D. Duke; Douglas K. Martin; Burke W. Mamlin (AMIA, 2013)

Regenstrief Institute's New Medical Gopher: A Next-Generation Open-Source Computerized Order Entry System. - Jon D. Duke; Burke W. Mamlin; Douglas K. Martin (MedInfo, 2013)

Adherence to drug-drug interaction alerts in high-risk patients: a trial of context-enhanced alerting. - Jon D. Duke; Xiaochun Li; Paul R. Dexter (J. Am. Medical Informatics Assoc., 2013)

An EMR Designed for Teaching and Educational Research Based on Regenstrief Institute's Gopher System. - Blaine Y. Takesue; John T. Finnell; Jon D. Duke (AMIA, 2014)

Challenges in Quantifying Narcotic Use from Drug Dispensing Records. - Jianmin Wu; Jon D. Duke; John T. Finnell (AMIA, 2014)

Regenstrief Institute's Medical Gopher: A next-generation homegrown electronic medical record system. - Jon D. Duke; Justin Morea; Burke W. Mamlin; Douglas K. Martin; Linas Simonaitis; Blaine Y. Takesue; Brian E. Dixon; Paul R. Dexter (Int. J. Medical Informatics, 2014)

An Interactive User Interface for Drug Labeling to Improve Readability and Decision-Making. - Hamed Abedtash; Jon D. Duke (AMIA, 2015)

OHDSI: An Open-Source Platform for Observational Data Analytics and Collaborative Research. - Jon D. Duke; Frank J. DeFalco; Chris Knoll; Vojtech Huser; Richard D. Boyce; Patrick B. Ryan (AMIA, 2015)

The Value of an Open-Source Observational Research Collaboratory: Results from the OHDSI Initiative. - Jon D. Duke; George Hripcsak; Nigam Shah; Patrick B. Ryan (AMIA, 2015)

Regenstrief ePRO: A Rule-Based Platform for Capturing Targeted Patient-Reported Outcomes. - Jon D. Duke; Daniel J. Vreeman; Jeremy Leventhal; Chen Wen; Katie Allen; David A. Haggstrom (AMIA, 2015)

Supporting Clinical Cognition: A Human-Centered Approach to a Novel ICU Information Visualization Dashboard. - Anthony Faiola; Preethi Srinivas; Jon D. Duke (AMIA, 2015)

Observational Health Data Sciences and Informatics (OHDSI): Opportunities for Observational Researchers. - George Hripcsak; Jon D. Duke; Nigam H. Shah; Christian G. Reich; Vojtech Huser; Martijn J. Schuemie; Marc A. Suchard; Rae Woong Park; Ian Chi Kei Wong; Peter R. Rijnbeek; Johan van der Lei; Nicole Pratt; et al. (MedInfo, 2015)

Methods to Measure and Improve the Quality of Large Scale Health Data: An Application in Public Health Surveillance. - Brian E. Dixon; Jon D. Duke; Shaun J. Grannis (AMIA, 2016)

Ensuring Reproducibility in Observational Research: Building and Sharing Knowledge Resources in the OHDSI Network. - Jon D. Duke; Nigam H. Shah; George Hripcsak; Patrick B. Ryan (AMIA, 2016)

Endorsement, Prior Action, and Language: Modeling Trusted Advice in Computerized Clinical Alerts. - Debaleena Chattopadhyay; Jon D. Duke; Davide Bolchini (CHI Extended Abstracts, 2016)

Observational Health Data Sciences and Informatics (OHDSI): A Rapidly Growing International Network for Open Science and Data Analytics in Healthcare. - Jon D. Duke; George Hripcsak; Nigam Shah; Patrick B. Ryan; Vojtech Huser (CRI, 2016)

Understanding Advice Sharing among Physicians: Towards Trust-Based Clinical Alerts. - Debaleena Chattopadhyay; Romisa Rohani Ghahari; Jon D. Duke; Davide Bolchini (Interact. Comput., 2016)

From Large-Scale Network Analytics to Clinical Solutions in OHDSI. - Jon D. Duke; George Hripcsak; Patrick B. Ryan; Nigam Shah (AMIA, 2017)

Large-scale adverse effects related to treatment evidence standardization (LAERTES): an open scalable system for linking pharmacovigilance evidence sources with clinical data. - Richard D. Boyce; Erica A. Voss; Vojtech Huser; Lee Evans; Christian G. Reich; Jon D. Duke; Nicholas P. Tatonetti; Tal Lorberbaum; Michel Dumontier; Manfred Hauben; Magnus Wallberg; Lili Peng; et al. (J. Biomed. Semant., 2017)

Using HL7 FHIR to Improve Standardization and Interoperability of Common Data Models for Clinical and Translational Research. - Guoqian Jiang; Jon D. Duke; Daniella Meeker; Mitra Rocca; Harold R. Solbrig; Shawn N. Murphy (AMIA, 2018)

Design and Evaluation of Trust-Eliciting Cues in Drug-Drug Interaction Alerts. - Debaleena Chattopadhyay; Nitya Verma; Jon D. Duke; Davide Bolchini (Interact. Comput., 2018)

Normalizing Clinical Document Titles to LOINC Document Ontology: an Initial Study. - Xu Zuo; Jianfu Li; Bo Zhao 001; Yujia Zhou 003; Xiao Dong; Jon D. Duke; Karthik Natarajan; George Hripcsak; Nigam Shah; Juan M. Banda; Ruth M. Reeves; Hua Xu 001 (AMIA, 2020)

Beyond Long Context: When Semantics Matter More than Tokens. - Tarun Kumar Chawdhury; Jon D. Duke (CoRR, 2025)