A Hidden Markov Model for de Novo Peptide Sequencing. - Bernd Fischer 003; Volker Roth 001; Joachim M. Buhmann; Jonas Grossmann; Sacha Baginsky; Wilhelm Gruissem; Franz F. Roos; Peter Widmayer (NIPS, 2004)

Semi-supervised LC/MS alignment for differential proteomics. - Bernd Fischer 003; Jonas Grossmann; Volker Roth 001; Wilhelm Gruissem; Sacha Baginsky; Joachim M. Buhmann (ISMB (Supplement of Bioinformatics), 2006)

PepSplice: cache-efficient search algorithms for comprehensive identification of tandem mass spectra. - Franz F. Roos; Riko Jacob; Jonas Grossmann; Bernd Fischer 003; Joachim M. Buhmann; Wilhelm Gruissem; Sacha Baginsky; Peter Widmayer (Bioinform., 2007)

specL - an R/Bioconductor package to prepare peptide spectrum matches for use in targeted proteomics. - Christian Panse; Christian Trachsel; Jonas Grossmann; Ralph Schlapbach (Bioinform., 2015)