The application of Jacobian-free Newton-Krylov methods to reduce the spin-up time of ocean general circulation models. - Erik Bernsen; Henk A. Dijkstra; Jonas Thies; Fred W. Wubs (J. Comput. Phys., 2010)

Design of a Parallel Hybrid Direct/Iterative Solver for CFD Problems. - Jonas Thies; Fred W. Wubs (eScience, 2011)

A Robust Two-Level Incomplete Factorization for (Navier-)Stokes Saddle Point Matrices. - Fred W. Wubs; Jonas Thies (SIAM J. Matrix Anal. Appl., 2011)

Parallel Block Preconditioning by Using the Solver of Elmer. - Mika Malinen; Juha Ruokolainen; Peter Råback; Jonas Thies; Thomas Zwinger (PARA, 2012)

ESSEX: Equipping Sparse Solvers for Exascale. - Andreas Alvermann; Achim Basermann; Holger Fehske; Martin Galgon; Georg Hager; Moritz Kreutzer; Lukas Krämer; Bruno Lang; Andreas Pieper; Melven Röhrig-Zöllner; Faisal Shahzad 001; Jonas Thies; et al. (Euro-Par Workshops (2), 2014)

On the parallel iterative solution of linear systems arising in the FEAST algorithm for computing inner eigenvalues. - Martin Galgon; Lukas Krämer; Jonas Thies; Achim Basermann; Bruno Lang (Parallel Comput., 2015)

Increasing the Performance of the Jacobi-Davidson Method by Blocking. - Melven Röhrig-Zöllner; Jonas Thies; Moritz Kreutzer; Andreas Alvermann; Andreas Pieper; Achim Basermann; Georg Hager; Gerhard Wellein; Holger Fehske (SIAM J. Sci. Comput., 2015)

Performance Engineering and Energy Efficiency of Building Blocks for Large, Sparse Eigenvalue Computations on Heterogeneous Supercomputers. - Moritz Kreutzer; Jonas Thies; Andreas Pieper; Andreas Alvermann; Martin Galgon; Melven Röhrig-Zöllner; Faisal Shahzad 001; Achim Basermann; Alan R. Bishop; Holger Fehske; Georg Hager; Bruno Lang; et al. (Software for Exascale Computing, 2016)

Towards an Exascale Enabled Sparse Solver Repository. - Jonas Thies; Martin Galgon; Faisal Shahzad 001; Andreas Alvermann; Moritz Kreutzer; Andreas Pieper; Melven Röhrig-Zöllner; Achim Basermann; Holger Fehske; Georg Hager; Bruno Lang; Gerhard Wellein (Software for Exascale Computing, 2016)

GHOST: Building Blocks for High Performance Sparse Linear Algebra on Heterogeneous Systems. - Moritz Kreutzer; Jonas Thies; Melven Röhrig-Zöllner; Andreas Pieper; Faisal Shahzad 001; Martin Galgon; Achim Basermann; Holger Fehske; Georg Hager; Gerhard Wellein (Int. J. Parallel Program., 2017)

Numerical bifurcation analysis of a 3D turing-type reaction-diffusion model. - Weiyan Song; Fred W. Wubs; Jonas Thies; Sven Baars (Commun. Nonlinear Sci. Numer. Simul., 2018)

Towards Scalable Automatic Exploration of Bifurcation Diagrams for Large-Scale Applications. - Jonas Thies; Michiel Wouters; Rebekka-Sarah Hennig; Wim Vanroose (ENUMATH, 2019)

Performance Engineering for a Tall & Skinny Matrix Multiplication Kernels on GPUs. - Dominik Ernst; Georg Hager; Jonas Thies; Gerhard Wellein (PPAM (1), 2019)

Performance Engineering for a Tall & Skinny Matrix Multiplication Kernel on GPUs. - Dominik Ernst; Georg Hager; Jonas Thies; Gerhard Wellein (CoRR, 2019)

CRAFT: A Library for Easier Application-Level Checkpoint/Restart and Automatic Fault Tolerance. - Faisal Shahzad 001; Jonas Thies; Moritz Kreutzer; Thomas Zeiser; Georg Hager; Gerhard Wellein (IEEE Trans. Parallel Distributed Syst., 2019)

A staggered-grid multilevel incomplete LU for steady incompressible flows. - Sven Baars; Mark van der Klok; Jonas Thies; Fred W. Wubs (CoRR, 2020)

PHIST: A Pipelined, Hybrid-Parallel Iterative Solver Toolkit. - Jonas Thies; Melven Röhrig-Zöllner; Nigel Overmars; Achim Basermann; Dominik Ernst; Georg Hager; Gerhard Wellein (ACM Trans. Math. Softw., 2020)

A Recursive Algebraic Coloring Technique for Hardware-efficient Symmetric Sparse Matrix-vector Multiplication. - Christie L. Alappat; Achim Basermann; Alan R. Bishop; Holger Fehske; Georg Hager; Olaf Schenk; Jonas Thies; Gerhard Wellein (ACM Trans. Parallel Comput., 2020)

ESSEX: Equipping Sparse Solvers For Exascale. - Christie L. Alappat; Andreas Alvermann; Achim Basermann; Holger Fehske; Yasunori Futamura; Martin Galgon; Georg Hager; Sarah Huber; Akira Imakura; Masatoshi Kawai; Moritz Kreutzer; Bruno Lang; et al. (Software for Exascale Computing, 2020)

Performance of low-rank approximations in tensor train format (TT-SVD) for large dense tensors. - Melven Röhrig-Zöllner; Jonas Thies; Achim Basermann (CoRR, 2021)

(R)SE challenges in HPC. - Jonas Thies; Melven Röhrig-Zöllner; Achim Basermann (CoRR, 2021)

Performance engineering for real and complex tall & skinny matrix multiplication kernels on GPUs. - Dominik Ernst; Georg Hager; Jonas Thies; Gerhard Wellein (Int. J. High Perform. Comput. Appl., 2021)

Tensor product scheme for computing bound states of the quantum mechanical three-body problem. - Jonas Thies; Moritz Travis Hof; Matthias Zimmermann; Maxim Efremov (J. Comput. Sci., 2022)

Performance of the Low-Rank TT-SVD for Large Dense Tensors on Modern MultiCore CPUs. - Melven Röhrig-Zöllner; Jonas Thies; Achim Basermann (SIAM J. Sci. Comput., 2022)

SIMD vectorization for simultaneous solution of locally varying linear systems with multiple right-hand sides. - Martin Joachim Kühn; Johannes Holke; Annette Lutz; Jonas Thies; Melven Röhrig-Zöllner; Alexander Bleh; Jan Backhaus; Achim Basermann (J. Supercomput., 2023)

Algebraic temporal blocking for sparse iterative solvers on multi-core CPUs. - Christie L. Alappat; Jonas Thies; Georg Hager; Holger Fehske; Gerhard Wellein (Int. J. High Perform. Comput. Appl., 2025)

Performance of linear solvers in tensor-train format on current multicore architectures. - Melven Röhrig-Zöllner; Manuel Joey Becklas; Jonas Thies; Achim Basermann (Int. J. High Perform. Comput. Appl., 2025)